Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq36193 96.9 6e-15 >seq36193 Length=6611 Score = 96.9 bits (106), Expect = 6e-15 Identities = 220/331 (66%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||| | ||| |||||| | |||||||| || || || ||||| | | | || | Sbjct 958 CTCCCCAATCGGAAACCTCTCCATTTCACCCCCGATCCCCTTACGCGGCCTCTAAATGCG 1017 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 | | ||||| || | ||| || || || | || || || ||| | ||| | Sbjct 1018 CCGCTCATTGGTACACCGTGAACTACCGAGAAGCCTACGGGCTCTTCGCCTGCAATGGGA 1077 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 |||| |||||||||||||| ||| | | ||||||| || || || || |||||||||| Sbjct 1078 TTCTGTTCAATCACGAATCCCCACGGCGGGGTGAGAATTTCGTGACGCGAAAGATTACAC 1137 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || | | |||| |||| || |||| | || | | || ||| | | | Sbjct 1138 GAGCCGTGGGGAGGATCAAGATTGGGTTGCAGAGCAAACTGTTCATGGGGAATTTGCAGG 1197 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 || ||| |||||||| ||| ||| ||||| |||||||||||| | ||| |||| | Sbjct 1198 CTTCGAGAGATTGGGGTTTCGCGGGGGACTATGTGGAAGCGATGTGGATGATGCTGCAGC 1257 Query 194131 AGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||| | || || ||||| ||| | || || Sbjct 1258 AGGAGAAGCCGGACGATTACGTGGTGGCGAC 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 805430885668640