Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq173968 91.5 2e-13 seq74520 89.7 6e-13 >seq173968 Length=7941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 215/318 (68%), Gaps = 14/318 (4%) Strand=Plus/Minus Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || |||||||||||||| ||||||||||| ||||| | |||||||| | ||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 33664 ACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 || || | || | | |||| || | ||||| || ||||||||| || || || Sbjct 7881 ACCTC-CTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAA 7823 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATTCCAATCA 33780 || || | | ||| | || || | || |||| |||||| || || |||| || Sbjct 7822 GAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TTCC---CA 7769 Query 33781 TTGA----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| || | ||| | || ||||| || | |||||||| || ||||| ||||| Sbjct 7768 TTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTT 7709 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || ||||| | ||||| ||| || || || ||||| ||| || | || ||| || Sbjct 7708 CTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCTGGGTT 7649 Query 33897 TGGTGCAAGGATGGGTTC 33914 || || || | ||| || Sbjct 7648 AGGAGCGAGCAAGGGCTC 7631 >seq74520 Length=9548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | || |||| | |||||| | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621308506243040