Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq144336 96.9 9e-15 seq144321 96.9 9e-15 seq74520 95.1 3e-14 seq82795 91.5 4e-13 >seq144336 Length=10423 Score = 96.9 bits (106), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || ||||||||||||| ||||||||||| Sbjct 5994 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCACTCTGCTGATATG 5935 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| || ||||| ||||| ||| || || | || ||| | || |||||| Sbjct 5934 GGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCAT 5875 Query 111822 TTT 111824 || Sbjct 5874 GTT 5872 >seq144321 Length=9550 Score = 96.9 bits (106), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| ||||||||||| Sbjct 5087 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATG 5028 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| || ||||| ||||| ||| || || | || ||| | || || ||| Sbjct 5027 GGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCCCAT 4968 Query 111822 TTT 111824 || Sbjct 4967 GTT 4965 >seq74520 Length=9548 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | |||||| || ||| | |||||| |||| | Sbjct 3817 ATGAAAGATGATAGTATTGAAGGAATATATGACACTCTAAAGGAGTGTGCTGTTATCAGC 3758 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| ||| || ||||||||||| || | || || |||||| ||||| | ||||| || Sbjct 3757 AAGTCTGCTGGAGGAATTGGTGTTTCTGTTCATAACATTCGTGCCACAGGA-AGTTATAT 3699 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||||| || ||||| | | | Sbjct 3698 TCGTGGAACAAATGGGACA-TCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACA 3640 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | || || Sbjct 3639 CTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGG 3600 >seq82795 Length=1924 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || ||||| || | ||||| || || |||||||||||||| || ||| || Sbjct 164 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTC 223 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || | || || |||||||| ||||| | | |||||||| |||| || ||||||||| Sbjct 224 TGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAG 283 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||| ||||| ||||| | || |||||| ||||| |||| || Sbjct 284 TTAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGCGTGCTTGCTCTA 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299839349767208