Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9834 95.1 1e-14 seq45179 93.3 4e-14 seq73220 91.5 1e-13 seq121659 86.0 5e-12 seq127437 84.2 2e-11 seq76562 84.2 2e-11 >seq9834 Length=2319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| | || ||||| | | Sbjct 55 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAAAGCTCC 114 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| ||||| || || || || || Sbjct 115 GACACCATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGGATTCCACCAGACCAG 174 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||||| || ||||||||| || || |||| ||| | ||||| ||| Sbjct 175 CAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAAC 234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 235 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 264 >seq45179 Length=1454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || ||||| | ||||| | || ||||| | Sbjct 557 AATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 498 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| || || || ||||| || || || || Sbjct 497 CGACACCATCGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACCA 438 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| || || ||||| || ||||| | | ||| || ||||| || Sbjct 437 GCAGAGGCTGATTTTCGCAGGTAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACAA 378 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||| ||||| || || | || || ||| Sbjct 377 CATTCAGAAAGAGTCAACCCTCCACTTGGTG 347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | ||||| | |||||||| | | Sbjct 1012 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 953 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| || || || || || || || Sbjct 952 GACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 893 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| |||||||||| ||| | | |||||| || Sbjct 892 CAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 833 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || ||||| || || |||| || || Sbjct 832 ATCCAGAAAGAGTCAACTCTTCACTTGGT 804 >seq73220 Length=12354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||||||| ||| | || || | ||||| ||| | Sbjct 6915 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 6856 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||| ||| ||||| |||||||| ||||| || ||| Sbjct 6855 GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 6796 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | || || || || || |||| | | | | ||| || ||| Sbjct 6795 CAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCCGACTACAAC 6736 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||||||||| |||| Sbjct 6735 ATACAGAAAGAATCTACGCTTCA 6713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||||||| | || ||| | ||||| ||| | Sbjct 7599 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 7540 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| || || ||||| || || || || || || || Sbjct 7539 GACACCATTGATAATGTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 7480 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| ||||| |||| | | | | | || |||||||| Sbjct 7479 CAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGA-CATTGGCTGATTATAA 7421 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| || || |||| || || | | || ||||| || Sbjct 7420 CATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGG 7373 >seq121659 Length=2328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || ||| | || ||||| | | Sbjct 317 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAGACCATCACCCTGGAGGTCGAAAGCTCC 258 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| || || || ||||| || || || || Sbjct 257 GACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATTCCACCAGACCAG 198 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||| || ||||||| | ||| | || ||| || ||| Sbjct 197 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGAACCCTCGCCGACTACAAC 138 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || || | || || ||| Sbjct 137 ATTCAAAAAGAGTCAACTCTGCACTTGGTG 108 >seq127437 Length=6100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || ||| | |||||||| | || ||| | ||||| ||| | Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2638 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || || || ||||| ||||| || || || ||||| Sbjct 2637 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 2578 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||||| | || ||||| || || |||| ||| | | ||||||||| Sbjct 2577 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 2518 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| ||||| || ||| | || | || | | |||||||| ||| Sbjct 2517 CATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGA 2469 >seq76562 Length=2025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| |||||| |||||| | ||||| ||| | ||| Sbjct 1802 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAATTGGAA 1743 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | | ||||||||||| |||||||| || ||| |||| | || || Sbjct 1742 GATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTG 1683 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 1682 AGGCTCAGGGGAGGAACTATGAT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428833306058820