Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq127437 113 4e-20 seq44755 109 5e-19 seq73220 93.3 4e-14 seq76562 84.2 2e-11 >seq127437 Length=6100 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| ||||| ||||| ||| | ||| ||| | Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2638 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| |||| ||||| ||||| || || ||||| ||||| ||||| Sbjct 2637 TGATACGATTG-ACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 2579 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | |||| ||| || || || | || |||| || || |||||||||||| Sbjct 2578 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 2519 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| |||||||| || | || |||| | | ||| |||| |||| Sbjct 2518 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAA 2468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 ||||||||| ||||| || || ||||| ||||||||||| ||| | ||| | |||| | Sbjct 2469 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 2410 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||| | | ||||| ||||| |||||| || || || || ||||| || Sbjct 2409 --TGACAC-GATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGA 2353 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| || || || | ||| || ||||| | || |||| ||| |||| ||||| Sbjct 2352 CCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTA 2293 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| |||||||| || | ||| |||| Sbjct 2292 CAACATTCAGAAAGAGTCCACCCTTCATTTGGT 2260 >seq44755 Length=3421 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| ||||| ||||| ||| | ||| ||| | Sbjct 2740 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2681 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||| || |||| |||| ||||| ||||| || || ||||| ||||| ||| | Sbjct 2680 CGATACAGTTG-ACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACC 2622 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | |||| ||| || || || | || |||| || ||| |||| ||||||| Sbjct 2621 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACGTTGGCAGATTATA 2562 Query 115464 ACATTCAAAAAGAGTCTAC 115482 ||||||| || ||||| || Sbjct 2561 ACATTCAGAAGGAGTCCAC 2543 >seq73220 Length=12354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || ||||||||||| || | ||| ||| Sbjct 8055 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 7996 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || |||||| || || || || ||||| ||| || Sbjct 7995 GATACCATTG-ACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCA 7937 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || || || | || |||| | || ||||||||||||| Sbjct 7936 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAA 7877 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||||||| || |||| | || | | ||| ||||||||| Sbjct 7876 CATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAA 7827 >seq76562 Length=2025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| | || ||||||||| ||| | |||| ||| ||||||||||| ||| Sbjct 1802 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAATTGGAA 1743 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || | || ||||||||||| ||||||||||| || | || | || ||| Sbjct 1742 GATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTG 1683 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 1682 AGGCTCAGGGGAGGAA 1667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424253083557280