Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq82795 122 1e-22 seq74520 93.3 5e-14 seq173968 87.8 2e-12 >seq82795 Length=1924 Score = 122 bits (134), Expect = 1e-22 Identities = 228/331 (69%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || |||||||||||||||| |||||||||| ||||| || || || || || Sbjct 328 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 269 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 | ||| ||||| || || || || || ||||| ||||| || ||| || ||| || | Sbjct 268 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 210 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 32832 ||||||| ||||| || || || || | || | || || | ||| || || Sbjct 209 AGAAAATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 150 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 149 C---GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 93 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 92 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 33 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCAT 32983 |||| || || || |||||||||||||| || Sbjct 32 ACATCTCGGAGTGGATGTTTTCAATGGCAAT 2 >seq74520 Length=9548 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || || ||||| ||||| ||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| | || |||| | |||||| | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 3614 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 3673 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 3674 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 3733 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || || ||| | || || |||| || ||||| || Sbjct 3734 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 3793 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || ||||||||||| ||||| || || || |||||| Sbjct 3794 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 >seq173968 Length=7941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 191/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 || || |||||||||||||| || |||||||| |||||| | |||||||| | ||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 || || | || | | | || | ||||| || ||||||||| || || || Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATTCCAATCAT 33138 || || | | ||| | || || | || |||| |||||| || || |||| ||| Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TTCC---CAT 7768 Query 33139 TGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 ||| || | ||| | || ||||| || | |||||||| || ||||| ||||| Sbjct 7767 TGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTC 7708 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || ||||| | ||||| ||| | || ||||| || || ||| Sbjct 7707 TTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATA 7666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631965199342400