Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq43099 122 1e-22 seq129087 96.9 4e-15 seq159223 89.7 6e-13 seq6114 82.4 9e-11 >seq43099 Length=3685 Score = 122 bits (134), Expect = 1e-22 Identities = 249/368 (68%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 167926 TGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAAC 167985 |||||||||||| ||||| || || || ||| || | ||| | ||||||| Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 167986 TTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAA 168045 |||||| ||||| | |||||||| || | || |||| ||| | ||| ||| ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 168046 TAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTC 168105 ||| ||||||| || |||||| || | || || || | | | |||| ||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 168106 TATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGT 168165 | |||| | | ||||| || || || | |||| ||| |||| || || || ||| | Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 168166 TAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGA 168225 | || || ||||| || ||||| | |||||| || ||||| || ||| | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 168226 AGGACTCCGTGCCTGGATGGC--TCCAGTAGACCAACCACATGAAAACTTTGTATTCCCA 168283 ||| | | | | |||||||| | || ||| || || |||||||| || ||||| | Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCA--AGATCAGCCTTATGAAAACCTTATATTCTCT 1945 Query 168284 GAAGAAGT 168291 || || || Sbjct 1944 GAGGAGGT 1937 >seq129087 Length=3483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||||||||| || || || |||| ||| |||| ||| ||||| ||||| || || Sbjct 296 CGACCTTACAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTA 355 Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATA 167791 || ||||| | || ||||| ||||| ||| || || |||||||| | | | ||| Sbjct 356 ATTTATCCATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATA 415 Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851 ||| ||||| | || || || || || | ||| |||| | ||||| || |||||| Sbjct 416 TTTCGATTCATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATG 475 Query 167852 ATG 167854 || Sbjct 476 TTG 478 >seq159223 Length=5599 Score = 89.7 bits (98), Expect = 6e-13 Identities = 222/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 167839 CCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCA 167898 ||| || |||||||||||||||| | | |||||| | |||| | | || || Sbjct 3444 CCCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGTACTCTATTCA 3385 Query 167899 TGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAA--CA------CT 167950 ||||| || |||||| |||| ||| |||||||||||| ||||| || || Sbjct 3384 TGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTCTAGCT 3325 Query 167951 TTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGA 168010 || ||| ||| || | ||||| || ||||||||||| || || |||||| Sbjct 3324 TTTAAA-TTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAACCGT 3266 Query 168011 TTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAAT-AAGCGTTGGTTGCACTTCTTTAT 168069 || |||| ||||| || | |||||||| |||| || |||||||| | || ||||| Sbjct 3265 TTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTAT 3206 Query 168070 GCTTTTCGTTCCTGTCATGGGACTT-TGGACAAGTTCTATTGGTATCATCGGTCTCGCAC 168128 | | || || || | || || || |||| ||| || |||| | | | ||| | | Sbjct 3205 GTTGTTTGTACCAG-CAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGATCTATCTC 3147 Query 168129 TTAATCTTCGTGCTTATGACTTTGTGTCTCA 168159 | || | | ||| ||||||||| | | ||| Sbjct 3146 TAAAATTACATGCCTATGACTTTATTTTTCA 3116 >seq6114 Length=3795 Score = 82.4 bits (90), Expect = 9e-11 Identities = 170/252 (67%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| ||||| ||| | || |||| ||||| ||||| ||||| Sbjct 1947 GAAGAAACTTATTCAATGGTTTTCATTAATCATTTTTGGTTCCAAATCTTTGGGGTTGCT 1888 Query 168038 TTCAGCAATAAG-CGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTG 168096 || |||||| |||||||| | || |||||| | || || || || | | | || Sbjct 1887 TTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCAGTAACCGATTTATG 1828 Query 168097 GACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTC 168156 || ||| | | | | ||| || | || || | | ||| ||||||||||| | Sbjct 1827 GATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCCTATGACTTTGTTTT 1768 Query 168157 TCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCT 168216 || ||| || | || || | ||||| | ||||| |||||||| | |||||||| || Sbjct 1767 CCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTACATCAAAAACATTCT 1708 Query 168217 CCTCAATGAAGG 168228 | | || ||||| Sbjct 1707 CTTAAAAGAAGG 1696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565739867862400