Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq203223 132 5e-26 seq82795 122 1e-22 seq202117 89.7 6e-13 seq53327 89.7 6e-13 seq63208 87.8 2e-12 seq51023 87.8 2e-12 seq17191 87.8 2e-12 seq49513 86.0 7e-12 seq109926 84.2 2e-11 seq165794 82.4 8e-11 seq150077 82.4 8e-11 seq95464 82.4 8e-11 seq82759 82.4 8e-11 seq82563 82.4 8e-11 seq25642 82.4 8e-11 >seq203223 Length=1923 Score = 132 bits (146), Expect = 5e-26 Identities = 234/338 (69%), Gaps = 5/338 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | ||||||||| |||||| ||||| || |||||||| || || |||||||| Sbjct 335 TGTAGAGTAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTCG 276 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| ||||| || || | || || |||||||| ||||| ||||| || ||| || || Sbjct 275 AGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTT 217 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || ||||||||| || ||||| | | ||||||||||| || || Sbjct 216 CCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCG 157 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | ||||||| | |||||| | |||||| ||| | ||| || | || Sbjct 156 GA---GCCGTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTA 100 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| |||| ||| || | | ||| | | ||| || || | || | ||| Sbjct 99 TCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAAC 40 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAAT 93417 ||| ||||| ||||| |||| || || || ||||| Sbjct 39 AGACTGTACATCTCAGAGTGGATGTTTTCAATGGCAAT 2 >seq82795 Length=1924 Score = 122 bits (134), Expect = 1e-22 Identities = 183/257 (71%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | |||||||| || ||| ||||| || |||||||| || || |||||||| Sbjct 335 TGTAGAGCAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTG 276 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| ||||| || || | || || |||||||| ||||| ||||| || ||| || || Sbjct 275 AGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTT 217 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || ||||||||| || ||||| | | ||||||||||| || || Sbjct 216 CCGGAGAAGAAAATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCG 157 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | ||||||| | |||||| | |||||| ||| | ||| || | || Sbjct 156 GA---GCCGTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTA 100 Query 93320 TCGATAGCGTTAAATAG 93336 ||||| |||| ||| || Sbjct 99 TCGATTGCGTGAAAGAG 83 >seq202117 Length=2588 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1189 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 1132 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| || || Sbjct 1131 GCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 1098 >seq53327 Length=4109 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3013 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 2956 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| || || Sbjct 2955 GCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 2922 >seq63208 Length=3424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2290 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 2347 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||| ||| || Sbjct 2348 CGTGGGTTCAAATCCCACTTCTGACATATTTTT 2380 >seq51023 Length=5363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2519 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 2576 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 2577 GCGTGGGTTCAAATCCCACTTCTGACAA 2604 >seq17191 Length=3969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2895 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2838 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||||| || ||||| ||||||| | | ||||| Sbjct 2837 CGTGGGTTCAAATCCCACTTCTGACAATAATTTTATT 2801 >seq49513 Length=3041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2455 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 2512 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 2513 GCGTGGGTTCAAATCCCACTTCTGACA 2539 >seq109926 Length=10728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 8505 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 8448 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 8447 CGTGGGTTCAAATCCCACTTCTGACA 8422 >seq165794 Length=5370 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 ||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2916 GTCAGAATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2859 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||||| || ||||| ||||||| | | ||||| Sbjct 2858 CGTGGGTTCAAATCCCACTTCTGACAATAATTTTATT 2822 >seq150077 Length=9308 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 8862 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 8805 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 8804 GCGTGGGTTCAAATCCCACTTCTGACA 8778 >seq95464 Length=11494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 9124 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 9067 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 9066 GCGTGGGTTCAAATCCCACTTCTGACA 9040 >seq82759 Length=4442 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 947 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1004 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 1005 TTCAAATCCCACAGCTGTCAATTT 1028 >seq82563 Length=2389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 8/94 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 525 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 582 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| |||||| Sbjct 583 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 614 >seq25642 Length=7508 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6693 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6750 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 6751 TTCAAATCCCACAGCTGTCAATTT 6774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555395949822560