Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq747 170 4e-37 seq190163 143 5e-29 seq66523 138 2e-27 seq149226 93.3 9e-14 seq99529 93.3 9e-14 seq62995 93.3 9e-14 seq35580 93.3 9e-14 seq51434 89.7 1e-12 seq145223 87.8 4e-12 seq145222 87.8 4e-12 seq165622 86.0 1e-11 seq125879 86.0 1e-11 seq90360 86.0 1e-11 seq54142 86.0 1e-11 >seq747 Length=2783 Score = 170 bits (188), Expect = 4e-37 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 |||||| || |||||||||| || | |||||| || | ||| | || | |||||| Sbjct 1992 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCTAT-GGCA-GATCTTCAGAGGTCTATT 1935 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || |||| |||||||| || ||| || | ||||| || ||| | | |||||| Sbjct 1934 CCTTCAATGGTTGATGGCCTAAAACCAGGTCAAAGGAAGATTCTTTTTTGCTCTTTCAAG 1875 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || ||| | || ||||| || | |||||||||||||||||||| || || |||| Sbjct 1874 CGTAACTTCATTAAAGAAGCAAAAATTGCTCAGTTTTCTGGTTATGTCTCTGAGCATTCT 1815 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | |||||||| || ||||||||||| | ||||| | |||||||||||||||| | Sbjct 1814 GCTTACCATCATGGCGAGCAGAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTT 1755 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 |||||||| |||||||| ||| | || || || || ||||| ||||| |||||| Sbjct 1754 GTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTC 1700 >seq190163 Length=4743 Score = 143 bits (158), Expect = 5e-29 Identities = 233/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 |||||| || |||||||||| || | |||||| || | ||| | || | |||||| Sbjct 3848 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCTAT-GGCA-GATCTTCAGAGGTCTATT 3791 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || |||| |||||||| || ||| || ||||| || ||| | | |||||| Sbjct 3790 CCTTCAATGGTCGATGGCCTGAAACCAGGTCAAAAGAAGATTCTTTTTTGCTCTTTCAAG 3731 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 | ||| | || ||||| || | |||||||||||||||||||| || || ||| Sbjct 3730 TGTAACTTTGTCAAAGAAGCGAAAATTGCTCAGTTTTCTGGTTATGTGTCTGAGCATTCC 3671 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | |||||||| ||||||||| | | | ||||| | |||||||||||||||| | Sbjct 3670 GCTTACCATCATGGTGAGCAGTCTATTGCTAGCACCATTATTGGCATGGCACAGGACTTT 3611 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTG 218814 |||||||| |||||||| ||| | || || || || || || ||||| ||| || | Sbjct 3610 GTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGCCAATTTGGAACTCCTCATCAG 3551 Query 218815 GGTGGAAAGGATAGTGCTTCTGCCAGGTATAT 218846 || || || ||| ||| ||| ||||| || Sbjct 3550 GGGGGGAAAGATCTTGCAAGTGCAAGGTACAT 3519 >seq66523 Length=3746 Score = 138 bits (152), Expect = 2e-27 Identities = 232/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 |||||| || |||||||||| || | |||||| || | ||| | || | |||||| Sbjct 2538 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCTAT-GGCA-GATCTTCAGAGGTCTATT 2481 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || |||| |||||||| || ||| || ||||| || ||| | | |||||| Sbjct 2480 CCTTCAATGGTTGATGGCCTGAAACCAGGTCAAAAGAAGATTCTTTTTTGCTCTTTCAAG 2421 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 | ||| | || ||||| || | |||||||||||||||||||| || || ||| Sbjct 2420 TGTAACTTTGTCAAAGAAGCGAAAATTGCTCAGTTTTCTGGTTATGTGTCTGAGCATTCC 2361 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | |||||||| ||||||||| | | | ||||| | |||||||||||||||| Sbjct 2360 GCTTACCATCATGGTGAGCAGTCTATTGCTAGCACCATTATTGGCATGGCACAGGACTTA 2301 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTG 218814 |||||||| |||||||| ||| | || || || || ||||| ||| | ||| || | Sbjct 2300 GTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTAGAACTCCTCATCAG 2241 Query 218815 GGTGGAAAGGATAGTGCTTCTGCCAGGTATAT 218846 || || || ||| ||| ||| ||||| || Sbjct 2240 GGGGGGAAAGATCATGCAAGTGCAAGGTACAT 2209 >seq149226 Length=15826 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2842 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2901 Query 142563 CCCCAC 142568 |||||| Sbjct 2902 CCCCAC 2907 >seq99529 Length=2389 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 377 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 436 Query 142563 CCCCAC 142568 |||||| Sbjct 437 CCCCAC 442 >seq62995 Length=6809 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4620 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4561 Query 142563 CCCCAC 142568 |||||| Sbjct 4560 CCCCAC 4555 >seq35580 Length=8099 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2081 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2022 Query 142563 CCCCAC 142568 |||||| Sbjct 2021 CCCCAC 2016 >seq51434 Length=4198 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 94 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 35 Query 142562 GCCCCAC 142568 ||||||| Sbjct 34 GCCCCAC 28 >seq145223 Length=14229 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14059 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14000 Query 142563 CCCCAC 142568 |||||| Sbjct 13999 CCCCAC 13994 >seq145222 Length=5345 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3438 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3379 Query 142563 CCCCAC 142568 |||||| Sbjct 3378 CCCCAC 3373 >seq165622 Length=2091 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1949 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2008 Query 142564 CCCAC 142568 ||||| Sbjct 2009 CCCAC 2013 >seq125879 Length=7901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1923 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1982 Query 142564 CCCAC 142568 ||||| Sbjct 1983 CCCAC 1987 >seq90360 Length=3361 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 142 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 83 Query 142564 CCCAC 142568 ||||| Sbjct 82 CCCAC 78 >seq54142 Length=14225 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 9635 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9694 Query 142564 CCCAC 142568 ||||| Sbjct 9695 CCCAC 9699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025065429503404