Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq44755 102 6e-17 seq207794 98.7 7e-16 seq127437 95.1 9e-15 seq83787 95.1 9e-15 seq73220 91.5 1e-13 seq121659 86.0 4e-12 seq45179 86.0 4e-12 >seq44755 Length=3421 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || || || ||||| || | ||| ||| | | Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 2225 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| || || || |||||| | || | | || Sbjct 2224 TGACACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 2165 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || ||| |||| |||||||| Sbjct 2164 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 2105 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||| |||||||| |||||||| Sbjct 2104 CATTCAAAAGGAATCCACTCTTCA 2081 >seq207794 Length=1432 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || || || ||||| || | ||| ||| | | Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 1057 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| || || || |||||| | || | || Sbjct 1056 TGACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCA 997 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || ||| |||| |||||||| Sbjct 996 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 937 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || ||||| |||| | || | || |||||| Sbjct 936 CATTCAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGGA 888 >seq127437 Length=6100 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| ||| | || || |||||||| ||| | ||| || | Sbjct 2469 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 2410 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | ||| |||||| || || ||||| | || | |||| Sbjct 2409 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 2350 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || |||| |||||||| Sbjct 2349 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 2290 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || || || |||||| |||| Sbjct 2289 CATTCAGAAAGAGTCCACCCTTCATTTGGT 2260 >seq83787 Length=2295 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || || || |||||||| ||||| ||| | | Sbjct 1908 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 1967 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | |||| || || || || |||||| | || |||| Sbjct 1968 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 2027 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| ||||| || || |||||| ||| | |||||||||||| Sbjct 2028 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 2087 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| |||| | ||| | || ||||| Sbjct 2088 ATCCAGAAAGAGTCAACTCTTCACCTGGTCCTCCGTCTTCGTGGAGG 2134 >seq73220 Length=12354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || ||||| || ||||| || || | ||| || | || Sbjct 6915 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 6856 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| || || || || | ||| ||||| Sbjct 6855 GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 6796 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| ||||| || || ||| ||| ||||||| ||||| Sbjct 6795 CAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCCGACTACAAC 6736 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| |||||||| ||||| Sbjct 6735 ATACAGAAAGAATCTACGCTTCA 6713 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | ||||| |||| || || ||||| || | ||| || | Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| ||| || || || |||||| | ||| | |||| Sbjct 7768 AGATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 7709 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| || || || || ||| || |||| ||||| || Sbjct 7708 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 7649 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || ||||| |||| | ||| | |||| || Sbjct 7648 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGG 7601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| | | || ||||| || || |||||||| || || ||||| Sbjct 6594 GACAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTCATATTTGCTGGAAAGCAGCTAGAG 6535 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| || |||| |||||||||||||||||||||||||| |||||| Sbjct 6534 GATGGGCGGACCTTGGCAGATTACAATATTCAGAAGGAATCTACACTTCAT 6484 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| || ||||||||||| || || ||||||||| |||| |||| || | Sbjct 7028 ACCAGCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACT 6969 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| ||||||||||| || ||||| Sbjct 6968 ACAATATACAGAAGGAATCAACCCTTCA 6941 >seq121659 Length=2328 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || || |||||||| ||||| ||| | | Sbjct 545 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 486 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | |||| || || || || |||||| | || |||| Sbjct 485 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 426 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| ||||| || || |||||| ||| | ||||||||||| Sbjct 425 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAC 366 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| |||| | ||| | || ||||| Sbjct 365 ATCCAGAAAGAGTCAACTCTTCACCTGGTCCTCCGTCTTCGTGGAGG 319 >seq45179 Length=1454 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || || |||||||| ||||| ||| | | Sbjct 1012 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 953 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || || || || |||||| | || |||| Sbjct 952 GACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 893 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || || |||||| ||| | |||||||||||| Sbjct 892 CAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 833 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| |||| | ||| | || ||||| Sbjct 832 ATCCAGAAAGAGTCAACTCTTCACTTGGTCCTCCGTCTCCGTGGAGG 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357206286437176