Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq203223 123 5e-23 seq82795 100 5e-16 seq173968 98.7 2e-15 >seq203223 Length=1923 Score = 123 bits (136), Expect = 5e-23 Identities = 406/622 (65%), Gaps = 12/622 (2%) Strand=Plus/Plus Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| ||||| || ||| | ||||||||| ||||| || | | |||| ||| Sbjct 1 GATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAGAATCGTATATCAA 60 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 |||||| ||| ||| |||| || | || || || || || ||||| | ||| Sbjct 61 GGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAA 120 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| || | ||||| ||| |||||||| | |||| ||| || | ||| | || Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGA---AACCTTTGCCGAACGCCT 177 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | | || || || ||| || |||||||||||||| || |||| ||| || ||||| Sbjct 178 GCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGATATTCTG 237 Query 42767 GCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||| ||| | ||| || ||||| ||| | || |||||||| || | ||| | | Sbjct 238 GCTAAAGAAACGCGGTCTC-ATGCCGGGATTAACTTTCTCGAATGAGTTAATCTCGCGAG 296 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 ||||||| | || | ||||| || ||| | || | | |||| || ||| | || | Sbjct 297 ACGAGGGCTTACACTGCGACTTCGCGTGCTTACTCTAC---AGCCTACTTAGGAATAAAC 353 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 ||||| | || ||| ||| || | || | ||||| || || | |||||| Sbjct 354 TAAGCGAGGAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAGAAAGAGAGTTCG 413 Query 42946 TCACGCAGTCGC-TGCCCGTGTCC-CTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 || || | ||| | ||||| | || || || |||||| | || ||| || | || Sbjct 414 TCT-GC-GACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAATGAGCCAATA 471 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 |||| | | ||| ||||| | || || || ||||| | | | |||||| Sbjct 472 CATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAAGATGTACAACGT 531 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 || || ||||||| ||||| ||||| ||| |||| ||||||||||| ||||| Sbjct 532 TTCGAATCCGTTCGACTGGATGGAACTAATCTCTTTGCAGGGAAAGACCAACTTCTTCGA 591 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||| | || | || |||||| Sbjct 592 GAAGAGGGTTGGGGAGTACCAG 613 >seq82795 Length=1924 Score = 100 bits (110), Expect = 5e-16 Identities = 401/622 (64%), Gaps = 12/622 (2%) Strand=Plus/Plus Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| ||||| || ||| | ||||| ||| ||||| || | | |||| ||| Sbjct 1 GATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCGTATATCAA 60 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 |||||| ||| ||| |||| || | || || || || || ||||| | ||| Sbjct 61 GGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAA 120 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| || | ||||| ||| |||||||| | |||| ||| || | ||| | || Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGA---AACCTTTGCCGAACGCCT 177 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | | || || || ||| || ||||| |||||||| || |||| ||| || ||||| Sbjct 178 GCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTCTGCTCGATATTCTG 237 Query 42767 GCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||| ||| | ||| || ||||| ||| | || ||||| || || | ||| | | Sbjct 238 GCTAAAGAAACGCGGTCTC-ATGCCGGGATTAACTTTCTCAAATGAGTTAATCTCGCGAG 296 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 ||||||| | || | || || || ||| | || | | |||| || ||| | || | Sbjct 297 ACGAGGGCTTACACTGCGATTTCGCGTGCTTGCTCTAC---AGCCTACTTAGGAATAAAC 353 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 ||||| | || ||| ||| || | || | ||||| || || | |||||| Sbjct 354 TAAGCGAGGAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAGAAAGAGAGTTCG 413 Query 42946 TCACGCAGTCGC-TGCCCGTGTCC-CTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 || || | ||| | ||||| | || || || |||||| | || ||| | | || Sbjct 414 TCT-GC-GACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAATGAGTCAATA 471 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 |||| | | ||| ||||| | || || || ||||| | | | |||||| Sbjct 472 CATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAAGATGTACAACGT 531 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 || || ||||||| |||||| ||||| ||| |||| ||||||||||| ||||| Sbjct 532 TTCGAATCCGTTCGACTGGATGGAGCTAATCTCTTTGCAGGGAAAGACCAACTTCTTCGA 591 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||| | || | || || ||| Sbjct 592 GAAGAGGGTTGGGGAATATCAG 613 >seq173968 Length=7941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 178/256 (70%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || |||||||||||||| | ||||| Sbjct 7692 TCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTTTGGACCGCCGAGGAAGTCGACCTCT 7751 Query 42361 CCAAGGACACGGCCGGC--TGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 | ||||| | || | ||||| |||| | | || ||| ||| ||| ||| Sbjct 7752 CTCAGGACCAG--CGTCAATGGGAAAACCTCAC---CAGCGA-CGAGAAGCACTTCATCA 7805 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 | || || |||||||||||||| |||||||| || ||| || ||||| ||| | Sbjct 7806 GTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCGTCCTCGAAAACCTCGCCGGAA 7865 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||||||| ||||| ||| | ||||| || |||||| || || ||||| |||| Sbjct 7866 GGTTCATGAAGGAGGTCCAGGTCGCCGAGGCTCGTGCCTTCTATGGATTTCAGATTGCCA 7925 Query 42535 TAGAGAACGTGCACTC 42550 | || ||| | ||||| Sbjct 7926 TTGAAAACATCCACTC 7941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941855068517440