Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq127437 98.7 8e-16 seq84576 87.8 1e-12 >seq127437 Length=6100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| || |||| |||||| ||| ||| ||||||||||||||||||||| Sbjct 2242 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 2301 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | || || || ||||| || || | |||||| || || Sbjct 2302 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 2361 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| ||||| |||||| ||| | || | || | |||| | || Sbjct 2362 ATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATC---GTGTCAGAACTCTCT 2418 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || |||||||| || ||||| || ||||||||||||||| Sbjct 2419 ACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 2469 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| ||||||||||||||||||||| | ||| ||| || Sbjct 1795 AGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCG 1853 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||| ||||| || ||||| ||||| | ||||||||| || | | ||| Sbjct 1854 ACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTC 1913 Query 34029 TTTGTCCATAATTTT 34043 |||||| |||||| Sbjct 1914 CTTGTCCTGAATTTT 1928 >seq84576 Length=1122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| ||||||||||||||||||||| | ||| ||| || Sbjct 794 AGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCG 852 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||| ||||| || ||||| ||||| | ||||||||| || | | ||| Sbjct 853 ACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTC 912 Query 34029 TTTGTCCATAATTTT 34043 |||||| |||||| Sbjct 913 CTTGTCCTGAATTTT 927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396044019816088