Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq82795 93.3 9e-14 >seq82795 Length=1924 Score = 93.3 bits (102), Expect = 9e-14 Identities = 292/450 (65%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| || || || |||| | | ||||| ||||| ||| | || ||||| || ||| Sbjct 164 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTC 223 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||| | || || ||||| ||| ||| | ||||| || | | | || || ||| Sbjct 224 TGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAG 283 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAGCT 243467 || ||| || ||||||||| | ||| | |||| | |||| | || || Sbjct 284 TTAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGC-GTGCTTGCTCTACAGCCTACT 342 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 ||| || ||| || | || || |||| || | || | || || | || Sbjct 343 TAGGAATAAACTAAGCGAGGAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAGA 402 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || || ||| | |||||||| | || ||| || | || |||||| || || || Sbjct 403 AAGAGAGTTCGTCTGCGACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAAT 462 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | || |||||||||||||| ||||| ||| | || ||| | ||||| | ||| | Sbjct 463 GAGTCAATACATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAAGAT 522 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| ||| || || | || |||||||| || || | || || || || || Sbjct 523 GTACAACGTTTCGAATCCGTTCGACTGGATGGAGCTAATCTCTTTGCAGGGAAAGACCAA 582 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||| | || | || ||||| Sbjct 583 CTTCTTCGAGAAGAGGGTTGGGGAATATCA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099906289491400