Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq203223 109 7e-19 seq82795 100 3e-16 seq90559 87.8 2e-12 >seq203223 Length=1923 Score = 109 bits (120), Expect = 7e-19 Identities = 180/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| | ||||||||||| | ||| ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 184 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || || ||||||| || ||| | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 126302 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 126303 ATGGATCTTTGATGTAC 126319 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 >seq82795 Length=1924 Score = 100 bits (110), Expect = 3e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| | ||||| ||||| | ||| ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || || |||||||| || || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGCGAAT 184 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || || ||||||| || ||| | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 126302 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 126303 ATGGATCTTTGATGTAC 126319 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 >seq90559 Length=17024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || ||||||||||| ||||| || ||||| |||||||| || | ||||||||| | Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 10937 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 | ||| || | | ||| | || || || ||||||||||| ||||| || || || Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 10997 GG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || |||||||| || ||||| | || |||||||| || || || | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||||| ||| || || | | ||| | || || ||| || || | ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | |||| ||| || |||||||| || || || ||| Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 5807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595782231487520