Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq45179 104 2e-17 seq121659 100 2e-16 seq9834 98.7 7e-16 seq73220 96.9 2e-15 seq127437 93.3 3e-14 seq2835 84.2 2e-11 >seq45179 Length=1454 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || ||||| || ||||||||||| | Sbjct 330 CCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCG 389 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| ||||||| | || || || ||| | |||| | ||| ||||| |||| Sbjct 390 AGAGTTCGGCCGTCTTCCAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 449 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || || ||| || | || || || ||| |||| || Sbjct 450 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCGACC 509 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||||| || || || ||||||||||| |||||||| ||||| Sbjct 510 TCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 556 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || || | ||| | ||||| | || Sbjct 125 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTG 184 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || |||||| | ||||| | ||| || || ||| || ||||||||||| ||| || Sbjct 185 CTTCCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 244 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||| ||| | || || || ||| | | || || || | || ||||| || || | Sbjct 245 TGC-TTTCACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAG 303 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| || || || ||||||||| Sbjct 304 TCAGAGTCTTCACGAAGATTTGCATA 329 >seq121659 Length=2328 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || ||||| || |||||||||||| || ||| | | ||||| | || Sbjct 343 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGC 402 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | |||| | ||| ||||| |||||| || |||||||| || ||| Sbjct 403 TTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTG 462 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || || ||| |||| || || || |||||||| || ||||| Sbjct 463 GCTTTAACGTTGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTA 522 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 523 AGAGTCTTCACAAATATCTGCAT 545 >seq9834 Length=2319 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || || || || ||||||||||| Sbjct 281 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 222 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | | || || | || ||||| ||| | |||| | ||| ||||| |||| Sbjct 221 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 162 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| || | || || || ||| |||| || Sbjct 161 ATCCCTTCCTTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 102 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || || ||||| |||||||| ||||| Sbjct 101 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 55 >seq73220 Length=12354 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | ||| || ||||||||||| || || || |||||||| || Sbjct 7143 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCC- 7201 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 | ||| || | ||||| | ||||| || || |||| | | ||| ||||| Sbjct 7202 -GCCAATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTGG 7260 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| ||||| ||| ||| | || || || || | | || Sbjct 7261 GGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTC 7320 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | |||||| ||||| || || || || || |||||||||||||| Sbjct 7321 AACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || ||||| ||||| || | | ||| | ||||||| || Sbjct 6941 TGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGC 7000 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT-CACAAATTTT 15092 || ||||| | || | | ||| ||||| |||||| |||||||||| | | |||| Sbjct 7001 TTACCAGCAAAGATTAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTGTCCTGGAGTTTT 7060 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || ||||| || | | || || || | ||| || |||||||| || Sbjct 7061 GC-TTTCACATTGTCGATAGTGTCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGT 7119 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 7120 AAGGGTCTTCACAAATATTTGCAT 7143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| ||||| ||||||||||| ||| | | | | | || || | ||| Sbjct 6713 TGAAGCGTAGATTCTTTCTGTATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCAAGCTGT 6772 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||||||||| ||||| ||||||||||| |||||| Sbjct 6773 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTT 6832 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || | || || || | || || |||||||| || Sbjct 6833 GCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTT 6892 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || |||||||| |||||| Sbjct 6893 AAGGTCTTCACAAAAATCTGCATA 6916 Score = 82.4 bits (90), Expect = 5e-11 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 14932 CATCAGCAACCATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTT 14991 |||| ||||||| ||||| || | || | ||| | |||||| ||||| || || Sbjct 6443 CATCTGCAACCAACATCACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATTCCTTC 6502 Query 14992 TGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAA 15050 || || |||||||| || || | | | | || |||| || || ||||| |||| | Sbjct 6503 TGAATATTGTAATCTGCCAAGG-TCCGCCCATCCTCTAGCTGCTTTCCAGCAAATATGAG 6561 Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTA 15109 | ||| || || || || || |||||||| ||| ||||| || ||| | |||| Sbjct 6562 CCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTC-ACATTATCTA 6620 Query 15110 TAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAA 15169 | || || | || || || | || || |||||||||||||| || || ||||||| Sbjct 6621 TGGTGTCAGAGCTCTCCACCTCAAGTGTGATCGTTTTACCTGTCAGGGTCTTCACAAAAA 6680 Query 15170 TTTGCATA 15177 | |||||| Sbjct 6681 TCTGCATA 6688 >seq127437 Length=6100 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || | | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 2242 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 2301 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | || || | ||||| ||||| | || | | ||| ||||| || Sbjct 2302 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 2360 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| |||||||| ||||| |||||| | || || || || | | ||||| Sbjct 2361 GATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTAC 2420 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 2421 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 2468 >seq2835 Length=4848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| || ||| |||| || | ||| Sbjct 786 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGT 727 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| ||||| ||| || ||||||||||| || || Sbjct 726 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTA 667 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || ||| || |||| ||| ||||| || || || Sbjct 666 GCCTTGACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTT 607 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 606 AGGGTTTTCACAAAGATCTGCATCTT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356475365912540