Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq138849 100 3e-16 seq56209 100 3e-16 seq45179 100 3e-16 seq76562 93.3 4e-14 seq2835 91.5 1e-13 seq83787 87.8 2e-12 seq76175 87.8 2e-12 seq73220 82.4 7e-11 >seq138849 Length=4585 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| |||||||| || ||| Sbjct 1457 CCACCACGGAGGCGAAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 1398 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| ||||| || ||| | || | || |||||||||||||| Sbjct 1397 AGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 1338 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || |||| || | ||||| || || || || Sbjct 1337 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACC 1278 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || ||||| || || || ||||| |||||| Sbjct 1277 TCTAGGGTTATCGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 1230 >seq56209 Length=7549 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| |||||||| || ||| Sbjct 2974 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 2915 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| ||||| || ||| | || | || |||||||||||||| Sbjct 2914 AGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 2855 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || |||| || | ||||| || || || || Sbjct 2854 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACC 2795 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || ||||| || || || ||||| |||||| Sbjct 2794 TCTAGGGTTATCGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 2747 >seq45179 Length=1454 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| || || || || || ||||| || ||| || |||| || Sbjct 354 TGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGC 413 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | |||| | ||||||||||| |||||||| || ||||| || || || Sbjct 414 TTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTA 473 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||||||||| ||||| || ||||||| || || ||||| Sbjct 474 GCTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGT 532 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||||||| ||||| Sbjct 533 CAGAGTTTTAACAAAAATCTGCAT 556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | | ||| | ||||| || || || || |||||||| || || Sbjct 555 ATTCCTCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCA 614 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| || | || || || ||| | |||| | ||||||||||| Sbjct 615 GCGAGGGTTCGGCCATCTTCAAGCTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGT 674 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || | || | || | ||||||||| || Sbjct 675 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTC 733 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || | || || ||||| || ||||| |||||||| |||||| Sbjct 734 GACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | || || ||||| || || |||||||| |||||| Sbjct 783 ATCCCTCCACGGAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCG 842 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | |||| | ||||||||||| Sbjct 843 GCAAGGGTTCGCCCATCTTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGT 902 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || ||| | || | ||||||||| ||| Sbjct 903 GGAATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCG 962 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||||| || || || || ||||| || ||||| || |||||| Sbjct 963 ACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCACAAATATCTGCATC 1013 >seq76562 Length=2025 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | ||||||||| || || || || || || || |||||||| |||||||| Sbjct 1667 TTCCTCCCCTGAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTG 1726 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | ||| ||||||||||| || || | ||||||| ||||| || || | Sbjct 1727 CAAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 1786 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 |||||||||| || || |||| Sbjct 1787 GAATGCCTTCCTTGTCCTGAA 1807 >seq2835 Length=4848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 810 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 751 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| |||||||| ||| | || | || ||||||||||| || Sbjct 750 AGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 691 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || || |||| || | |||||| || || || || Sbjct 690 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGATGATTCAACC 631 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| ||||| || |||||| Sbjct 630 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATC 583 >seq83787 Length=2295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || ||||| || || |||||||| |||||| Sbjct 2137 ATCCCTCCACGAAGACGGAGGACCAGGTGAAGAGTTGACTCTTTCTGGATATTGTAATCG 2078 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | |||| | ||||||||||| Sbjct 2077 GCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGT 2018 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || | | || | || | || | || | |||||||| || Sbjct 2017 GGAATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTC 1959 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | ||||| || || || || |||||||| ||||| || |||||| Sbjct 1958 GACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTTTTCACAAATATCTGCATC 1907 >seq76175 Length=8586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 2483 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 2424 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| |||||||| ||| | || | || ||||||||||| || Sbjct 2423 AGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG 2364 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || || |||| || | |||||| || || || || Sbjct 2363 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACC 2304 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 2303 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 2256 >seq73220 Length=12354 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || ||||| ||||| || || || || || ||| Sbjct 6686 ATACCTCCACGAAGGCGAAGAACAAGGTGAAGCGTAGATTCTTTCTGTATGTTGTAGTCG 6745 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||||| || | |||| | || ||||| || Sbjct 6746 GCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGA 6805 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || ||||||||| |||| || | ||||| || ||| Sbjct 6806 GGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 6865 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||||| || |||| || || |||||||| ||||| Sbjct 6866 ACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 6915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450814182982240