Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq129087 111 2e-19 seq161624 93.3 5e-14 seq34924 86.0 8e-12 seq203261 82.4 9e-11 seq50242 82.4 9e-11 >seq129087 Length=3483 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 6721 CATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCG 6780 || ||||||||| ||||| | |||| || | || || || ||||| | ||| || Sbjct 478 CAACATATGAAATGGGTTCAATGTCCGATTACGAAACCCTTGGCAAAAGAGCATGAATCG 419 Query 6781 GAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATA 6840 ||||| | | | |||||||| ||| || ||| ||||| ||||| || | ||||| Sbjct 418 AAATATAGTTACTACACCAAAACTAGGCACAGAGAGCCAACCAGACTGACCTAATGGATA 359 Query 6841 CATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGG 6900 || || || ||||| ||||| ||| |||| ||| |||| || |||||||||||||| || Sbjct 358 AATTAGGAATACAGAAACAAAAACAACAATTGGAGCAGAGAATGCGATTGCATTGTAAGG 299 Query 6901 ACGAATACCGACTAGACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAG 6954 || | || | || || | || || || || | |||||||||||| || Sbjct 298 TCGCAATTGAACAAATCGAGCAAGTTCGAATTGACGTAACATGAAACCTATTAG 245 >seq161624 Length=13970 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 7974 TGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACG 8033 ||||||| |||||||| |||||| ||| ||| || ||||| |||| ||| ||||||| | Sbjct 9947 TGTGGAATGGGTGCATAAGGATGATGTACTCAGCCTGGAATACAATTATGAAGTTGAAAG 9888 Query 8034 TACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGA 8093 || || | | || ||||||||| | ||| || |||||||| | | || | Sbjct 9887 TATCAAAAAGTCCTAGAGGCATACAATTAGAAAAGTTTTATTGACCGATTAGGTTGATCA 9828 Query 8094 GGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCA 8153 ||| ||| ||| | | |||| ||| || ||||| ||| ||||| || |||| Sbjct 9827 AGAAAACAACAGTAGTAACTACAACAAGAGTTGAATATGCAACAACAATCCAAGGGCGCA 9768 Query 8154 TACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187 || | |||| | ||||||||||||| |||| Sbjct 9767 TATCCAGACAAAATCTAAGTTCCCACTCATGACC 9734 >seq34924 Length=1951 Score = 86.0 bits (94), Expect = 8e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||||| || || | || |||| | | | || ||||| || || || || ||||| Sbjct 965 TCAGTAGAGATCCCCTTCCTTGTGAGTATGAATTACACAGTCTGATGTTGGGTATGAAAC 906 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||||||||| | | ||||| ||| || || | || |||||||| ||| ||| ||| Sbjct 905 ACAGGTCAGCACGTAACCATTATCCATTTGCTTCTCGTCAAGGAATGATCCATCTGATTG 846 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 || || | ||||| | | | |||||||| | || ||||| ||||| | ||| || Sbjct 845 GTCGACAGATCCCGACACCATCTGCCCTGCACAGGTTGAGCAGGCTCCAGCCCTGCATGA 786 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||| || || | ||||| | |||||| | ||| || ||||| Sbjct 785 GTATGGCAGTTCCAGTCCTGCATTTTCAGCCGAATCAAGGATGTA 741 >seq203261 Length=8816 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/161 (71%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 7890 TTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCAC 7949 ||| ||| || | ||| || | |||| ||||| ||||| ||||||| || ||||| Sbjct 1204 TTTGACGTACGAAAGACAAGTTATCAAG-GAACCGTGCATAACACTGAATAGGGAACCGT 1262 Query 7950 CAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTT 8009 | || ||| || | | | | ||| ||||| | |||||| |||||||||||| Sbjct 1263 CGAATACAACAATTATGTCTAACATATGGAATGAGTGCATAAGGATGTTGTGC------- 1315 Query 8010 GGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGA 8050 ||| |||| |||| ||||||| |||||||| || || ||| Sbjct 1316 -GAACACAATCATGAAGTTGAAGGTACCAGATATTCCTAGA 1355 >seq50242 Length=1831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||||| || || | || |||| | | | || ||| | || || || || ||||| Sbjct 909 TCAGTAGAGATCCCCTTCCTTGTGAGTATGAATTACAGAGTCTGAAGTTGGGTATGAAAC 850 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||||||||| | | ||||| ||| || || | || |||||||| ||| ||| ||| Sbjct 849 ACAGGTCAGCACGTAACCATTATCCATTTGCTTCTCGTCAAGGAATGATCCATCTGATTG 790 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 ||| || | ||||| | | | |||||||| | || ||||| ||||| | ||| || Sbjct 789 ATCGACAGATCCCGACACCATCTGCCCTGCACAGGTTGAGCAGGCTCCAGCCCTGCATGA 730 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||| || || | || || | |||||| | ||| || ||||| Sbjct 729 GTATGGCAGTTCCAGTCCCGCATTTTCAGCCGAATCAAGGATGTA 685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620488269607360