Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq203223 109 7e-19 seq82795 100 3e-16 >seq203223 Length=1923 Score = 109 bits (120), Expect = 7e-19 Identities = 180/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| | ||||||||||| | || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 184 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | || || |||||||||| ||| || | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 127775 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 127776 ATGGATCTTTGATGTAC 127792 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 >seq82795 Length=1924 Score = 100 bits (110), Expect = 3e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || |||||||| || || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGCGAAT 184 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | || || |||||||||| ||| || | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 127775 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 127776 ATGGATCTTTGATGTAC 127792 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611893338635040