Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq203223 95.1 1e-14 seq90559 95.1 1e-14 seq82795 89.7 6e-13 >seq203223 Length=1923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| || || || ||||||| || || || || || ||||||||||| || || Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 221 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCGAATG 281 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 || | ||||| || |||||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 >seq90559 Length=17024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||||||||| ||||| ||||| ||||| || | ||||||||| | Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| || | | ||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 16095 GG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || | |||| ||| || || ||||| || || || || Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 5808 >seq82795 Length=1924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| || || || ||||||| || || || || || || |||||||| || || Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCT 221 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 281 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 || | ||||| || |||||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619109506079680