Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq203223 107 2e-18 seq82795 102 1e-16 >seq203223 Length=1923 Score = 107 bits (118), Expect = 2e-18 Identities = 136/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| | || || ||||| | |||||| ||| | ||| |||||||| || | Sbjct 306 AAGCCCT-CGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCG 248 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||||||||| || || | || || ||||| || ||||||||||| ||||| ||||| Sbjct 247 TTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGC 188 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689 ||| |||| || || || ||||| | | || ||||| ||| ||||||||| | Sbjct 187 GAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTCGATCCATCGGAGAGCCCACTG 128 Query 119690 GGCCTT 119695 ||| || Sbjct 127 GGCTTT 122 >seq82795 Length=1924 Score = 102 bits (112), Expect = 1e-16 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| | || || ||||| | |||||| ||| | ||| |||||||| || | Sbjct 306 AAGCCCT-CGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCG 248 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||||||||| || || | || || ||||| || ||||| ||||| ||||| ||||| Sbjct 247 TTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGC 188 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689 ||| |||| || || || ||||| | | || ||||| ||| ||||||||| | Sbjct 187 GAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTCGATCCATCGGAGAGCCCACTG 128 Query 119690 GGCCTT 119695 ||| || Sbjct 127 GGCTTT 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587426669183200