Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq74520 100 3e-16 seq90559 95.1 1e-14 seq203223 89.7 6e-13 seq82795 89.7 6e-13 >seq74520 Length=9548 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 2667 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCAGCACTGGTGTACTCGATG 2726 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||| ||||| ||| ||||| || |||| ||||| ||| ||||| ||||| Sbjct 2727 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 2786 Query 106577 TTGCACGCATCCT 106589 ||||| | ||||| Sbjct 2787 TTGCAAGAATCCT 2799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || |||||||| || || || | || ||| ||||| || || Sbjct 4018 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGA 4077 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 4078 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 4137 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| ||||||| || || |||| | | | || | | | | || ||| Sbjct 4138 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAG 4197 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||||||||||| |||||||||| || | ||| ||||||| Sbjct 4198 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCG 4244 >seq90559 Length=17024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||||||||| || || ||||| ||||| || | ||||||||| | Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| ||| || || ||||| || || || || Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 5808 >seq203223 Length=1923 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || | ||||| ||||| || || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 184 Query 117412 GCAAAAAGGCGCTCGGCGAAGG 117433 || | ||||| ||||| |||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGG 162 >seq82795 Length=1924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| ||||||||||| || || ||||| || || || Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGCGAAT 184 Query 117412 GCAAAAAGGCGCTCGGCGAAGG 117433 || | ||||| ||||| |||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGG 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588428826006560