Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq43099 140 4e-28 seq129087 116 5e-21 seq6114 111 2e-19 seq208434 91.5 2e-13 seq161624 84.2 3e-11 >seq43099 Length=3685 Score = 140 bits (154), Expect = 4e-28 Identities = 256/373 (69%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 182052 AAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCT 182111 |||| ||||| |||||||| || || || || ||||| || | ||||| | Sbjct 2300 AAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAACTT 2241 Query 182112 ATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATA 182171 |||||||||| | || ||||| || | || | ||||| | ||| ||| ||||| Sbjct 2240 ATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATA 2181 Query 182172 AGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCA 182231 | | ||||| ||||||||| || | || || || | | | | |||| ||| | Sbjct 2180 AATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTC 2121 Query 182232 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCA 182291 | || | ||||||| ||||| ||| | |||| ||| |||| || |||||||||||| Sbjct 2120 TTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCC 2061 Query 182292 GAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAG 182351 | | ||||| || || || |||| |||||||| || || |||||||| ||||||| Sbjct 2060 ATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAAG 2001 Query 182352 GTCTGCGTGCATGGTTAGCACCAGTC--GATCAACCACATGAGAACTTTGTGTTCCCTGA 182409 || | | | | ||| | ||| | || ||||| || |||| ||| || | ||| |||| Sbjct 2000 GTATTCATACTTGGATGGCA--ATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 182410 GGAAGTATTACCC 182422 ||| || ||||| Sbjct 1942 GGAGGTTATACCC 1930 >seq129087 Length=3483 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 181745 CTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGGAATCCGACCCTAC 181804 || || ||||| ||| | | ||||| ||||||||||| | | | | ||||| ||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 181805 AATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCT 181864 ||||| || || || || | ||| |||| ||| || || |||||||| || || ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 181865 CTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTC 181924 | || || || ||||| ||| || ||| ||||| ||||| | | || || || ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 181925 CTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATG 181978 | ||||| ||| || |||| |||| |||| | || || || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq6114 Length=3795 Score = 111 bits (122), Expect = 2e-19 Identities = 185/266 (70%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 182088 ATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGA 182147 || |||| ||| |||||||| |||||||||||| || | || |||| || | Sbjct 1961 ATCCAACACAAATTGAAGAAACTTATTCAATGGTTTTCATTAATCATTTTTGGTTCCAAA 1902 Query 182148 TCTTCGGTATTGCGTTTAGCAATAAGAGGT-GGTTGCATTTCTTTATGCTCTTTGTTCCT 182206 |||| || |||| ||| |||||| || |||| |||| |||||| | ||||| || Sbjct 1901 TCTTTGGGGTTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCA 1842 Query 182207 GTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCT 182266 || | | | | |||| ||| || | | | | || |||| ||| | | ||| Sbjct 1841 GTAACCGATTTATGGATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCC 1782 Query 182267 TATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTAC 182326 ||||||||||| | ||||||||| | ||||| |||| || | || ||||| |||||| Sbjct 1781 TATGACTTTGTTTTCCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTAC 1722 Query 182327 ACAAAGAACATTCTCTTGAATGAAGG 182352 | || ||||||||||| || ||||| Sbjct 1721 ATCAAAAACATTCTCTTAAAAGAAGG 1696 >seq208434 Length=3260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 38 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 97 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 98 CCTACTTGGGGAG 110 >seq161624 Length=13970 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 180081 GGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATAT 180140 |||| ||||||||||||| | | | ||| ||||||||| ||||| || |||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 180141 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCA 180200 || ||| || | | | ||| ||| ||| | || | | |||||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 180201 TTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAA 180260 || ||| | ||||| || || ||| || || ||||||| ||| |||| ||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 180261 GCAGAGCACAACATCCTGATGCACCCCTTCCACA 180294 || ||| ||| |||||| |||||||| ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608791120697760