Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq140924 113 5e-20 seq143880 89.7 6e-13 seq17476 84.2 3e-11 >seq140924 Length=1667 Score = 113 bits (124), Expect = 5e-20 Identities = 185/264 (70%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || | ||| |||||||| ||| ||||||| ||| || || |||||| Sbjct 1116 TGTTGAAGCCTCCAGGTGAGTTGGGGGCAGATATTGTTGTTGGCTCAGCTCAGCGGTTTG 1175 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 | | || ||||| ||||| |||||||||||||| ||||| || || | | |||| | Sbjct 1176 GAGTACCGATGGGGTATGGTGGTCCTCATGCTGCTTTCTTGGCCACCTCCCAAGAGTACA 1235 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAGGTAATAAAGC 153895 |||| | ||| || || |||||| | || ||||||| ||| | ||| ||||| Sbjct 1236 AGAGGATGATGCCAGGAAGAATTATTGG--AGTCAGTGTTGATGCTTCAGG----AAAGC 1289 Query 153896 ATACA----GATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCA 153951 | | || | ||| | ||||| ||||| || |||||| |||| ||||| || || | Sbjct 1290 CTGCTCTGCGAATGGCAATGCAGACGAGAGAACAACATATCCGGAGGGACAAGGCTACGA 1349 Query 153952 GTAACATCTGCACAGCTCAGGCAC 153975 | ||||||||||| ||||||| || Sbjct 1350 GCAACATCTGCACTGCTCAGGTAC 1373 >seq143880 Length=3558 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 ||||||| || || |||||||| || || || || || | | ||| || | | Sbjct 1661 TTATAGGGATGGGTTATTATGGAACTCTTGTGCCTCCTGTGATCTTGAGGAACATTATGG 1720 Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324 | || || ||||||| || ||||| || ||||||||||||||||| || || || Sbjct 1721 AAAACCCGGGTTGGTATACTCAGTACACGCCTTATCAAGCTGAGATATCGCAAGGGAGGC 1780 Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAA 153384 | || |||| ||||||| || || | | |||| ||||| || ||||| || | | Sbjct 1781 TTGAGTCTTTGCTCAATTATCAGACCATGGTTTCAGATCTTACTGGGTTACCCATGTCTA 1840 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || ||| || | ||||| | || || ||||| || |||||| Sbjct 1841 ATGCTTCTTTACTTGATGAGGGGACAGCGGCAGCTGAGGCAATG 1884 >seq17476 Length=3492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 153255 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 153314 ||| || | || || || ||||||| || ||||| || ||||||||||||||||| Sbjct 1847 AACATTATGGAAAACCCGGGTTGGTATACTCAGTACACGCCTTATCAAGCTGAGATATCG 1788 Query 153315 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTA 153374 || || || | || |||| ||||||| || || | | |||| ||||| || ||| Sbjct 1787 CAAGGGAGGCTTGAGTCTTTGCTCAATTATCAGACCATGGTTTCAGATCTTACTGGGTTA 1728 Query 153375 CCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || | || || ||| || | ||||| | || || ||||| || |||||| Sbjct 1727 CCCATGTCTAATGCTTCTTTACTTGATGAGGGGACAGCGGCAGCTGAGGCAATG 1674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577689151768960