Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq43099 111 2e-19 seq159223 84.2 3e-11 >seq43099 Length=3685 Score = 111 bits (122), Expect = 2e-19 Identities = 247/369 (67%), Gaps = 4/369 (1%) Strand=Plus/Minus Query 169933 TGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGAC--ACAGGAAGAAGAG 169990 |||||| ||||| |||||||| || ||| ||| || | || | | ||| || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAG--GAA 2245 Query 169991 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCT 170050 |||||||| ||||| | || ||||| || | || | ||||| | ||| ||||| Sbjct 2244 ACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCC 2185 Query 170051 AACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 170110 || || ||||| | ||||| || |||| || || || | | | | |||| Sbjct 2184 AATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGT 2125 Query 170111 TCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAG 170170 || |||| | |||| || ||||| || | |||| || | ||||| || || Sbjct 2124 GCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAA 2065 Query 170171 ATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAAT 170230 ||| | || |||||||| |||||||||| |||||||||||||| || || || ||| Sbjct 2064 ATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAAT 2005 Query 170231 GAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCA 170290 ||||| ||| | | ||| ||||| | ||||| || |||||||| | || ||| | Sbjct 2004 GAAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCT 1945 Query 170291 GAAGAAGTT 170299 || || ||| Sbjct 1944 GAGGAGGTT 1936 >seq159223 Length=5599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 169899 CTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTT 169958 |||| ||||||| || |||||| || | |||| |||||| ||||| |||||| | | Sbjct 3391 CTATTCATGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCAT 3332 Query 169959 TCAAGGCGTTTGATT-------CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCA 170011 || || || ||| | || || ||||| |||||||| || || | || Sbjct 3331 TCTAGCTTTTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTT--TTCA 3274 Query 170012 --AACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAG-CGTTGGCTTCAT 170068 ||||| || |||| || |||||| | ||||| ||||| || || |||||| | || Sbjct 3273 TTAACCGTTTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATAT 3214 Query 170069 TTTTTCATGTTGTTTGTGCC 170088 ||||| ||||||||||| || Sbjct 3213 TTTTTTATGTTGTTTGTACC 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572962418471520