Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq6114 109 6e-19 seq159223 107 2e-18 seq203261 93.3 5e-14 >seq6114 Length=3795 Score = 109 bits (120), Expect = 6e-19 Identities = 216/317 (68%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 165816 TGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT-------ACTCAA 165868 ||| | |||||||||| | ||||||| | ||| || || | | | || ||| Sbjct 2010 TGTTTGAAGATGGTGATGGTGCAAATCCATTCTAGTTTTTAAATTTTTAATCCAACACAA 1951 Query 165869 GAGGAAGAAACCTACTCAATGGTTACTGCA--AACCGTTTCTGGTCTCAGATCTTCGGTA 165926 |||||||| || ||||||||| | || || | ||| |||| || ||||| || Sbjct 1950 ATTGAAGAAACTTATTCAATGGTT--TTCATTAATCATTTTTGGTTCCAAATCTTTGGGG 1893 Query 165927 TTGCGTTTAGTAATAAGAGGT-GGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGT 165985 |||| ||| ||||| || |||| |||| |||||| ||||||| || || | | | Sbjct 1892 TTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCAGTAACCGAT 1833 Query 165986 CTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT 166045 | |||| ||| || | | | | || |||| ||| | | ||| ||||||||| Sbjct 1832 TTATGGATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCCTATGACTTT 1773 Query 166046 GTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAAC 166105 || | |||||| || | || || |||| || | ||||| || ||||||| |||||| Sbjct 1772 GTTTTCCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTACATCAAAAAC 1713 Query 166106 ATTCTCTTGAATGAAGG 166122 |||||||| || ||||| Sbjct 1712 ATTCTCTTAAAAGAAGG 1696 >seq159223 Length=5599 Score = 107 bits (118), Expect = 2e-18 Identities = 269/403 (67%), Gaps = 17/403 (4%) Strand=Plus/Minus Query 165725 ACCTTGAATCCC--TTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTT 165782 |||| ||| ||| |||||||||||||| |||| | | || || | |||| | Sbjct 3454 ACCTCGAACCCCCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGT 3395 Query 165783 CTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATA 165842 | || ||||||| || |||||| |||| ||| | |||||||||| | ||||||| Sbjct 3394 ACTCTATTCATGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATT 3335 Query 165843 CTTTCAAGGCATTTGACT--------CTACTCAAGAGGAAGAAACCTACTCAATGGTTAC 165894 | ||| | || ||| | | | ||||| |||||||| || ||||| ||| Sbjct 3334 CATTCTA-GCTTTTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTT-- 3278 Query 165895 TGCA--AACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT-AAGAGGTGGTT 165951 | || |||||||| |||| || |||||| | ||||| ||| ||| || | ||||| Sbjct 3277 TTCATTAACCGTTTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTT 3218 Query 165952 GCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTAT 166011 |||| |||||| ||||||| || | | | | | |||| ||| | | || | | Sbjct 3217 ATATTTTTTTATGTTGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGT 3158 Query 166012 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT-GTATCCCAAGAGATCAGAGCAGCAG 166070 || ||| |||| || | | ||| ||||||||| | | | |||| ||| | |||| Sbjct 3157 TGATCTATCTCTAAAATTACATGCCTATGACTTTATTTTTCAAAGAAATCTGTATAGCAA 3098 Query 166071 AAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTT 166113 |||| | | ||| || || |||| ||||| ||||||| Sbjct 3097 AAGATTGTAAATATGAGACTTTTTACATCAAAAATCTTCTCTT 3055 >seq203261 Length=8816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/142 (74%), Gaps = 8/142 (6%) Strand=Plus/Minus Query 164256 CTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTG 164315 || || || ||||| |||||||||| |||| | |||||| |||||||||||| Sbjct 1354 CTAGGAATATCTGGTACCTTCAACTTCATGATTGTGTTC--------GCACAACATCCTT 1303 Query 164316 ATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCA 164375 |||||| | ||||||||| | | | | || ||||| | |||||| || ||||||| Sbjct 1302 ATGCACTCATTCCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGTT 1243 Query 164376 ATGCACGGTTCTCTGGTTACTT 164397 ||||||||||| || | |||| Sbjct 1242 ATGCACGGTTCCTTGATAACTT 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555459781467360