Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq198069 93.3 5e-14 seq191896 89.7 6e-13 seq140924 87.8 2e-12 >seq198069 Length=3607 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| ||||| ||| ||| || ||| || ||||| || ||||| || | || Sbjct 3281 ACAGGTGGGTCTCACAAGCCCAGGTTGGATTGGAGCTGATGTTTGCCATCTCAATCTCCA 3222 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 || ||||| || ||||| ||||| || || ||||||||| | |||||||||||||| Sbjct 3221 CAAAACATTTTGCATTCCCCATGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGTGAA 3162 Query 159783 AAAACATCTCACACCATTT 159801 |||||| || |||||||| Sbjct 3161 AAAACACCTGGCACCATTT 3143 >seq191896 Length=2915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| || | ||||||||||| || ||||| ||||| || || Sbjct 1149 TGGAGCAGATGTCTGCCATCTTAATCTTCATAAGACATTTTGCATTCCCCATGGTGGAGG 1208 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||||| ||| | ||||| |||||||| |||||| | |||||||| || Sbjct 1209 TGGTCCGGGCATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTTCTA 1260 >seq140924 Length=1667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 12/205 (6%) Strand=Plus/Plus Query 158447 GGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 158506 ||||||| | || ||||| || || |||||||||||||| ||||| || || | | Sbjct 1170 GGTTTGGAGTACCGATGGGGTATGGTGGTCCTCATGCTGCTTTCTTGGCCACCTCCCAAG 1229 Query 158507 AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGCGAAGGTAA 158564 |||| ||||| | ||| || || |||||| | || ||||||| ||| ||| Sbjct 1230 AGTACAAGAGGATGATGCCAGGAAGAATTATTGG--AGTCAGTGTTGATGCTTCAGG--- 1284 Query 158565 TAAAGCATACA----GATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 ||||| | | || | ||| | ||||| ||||| || |||||| | || ||||| | Sbjct 1285 -AAAGCCTGCTCTGCGAATGGCAATGCAGACGAGAGAACAACATATCCGGAGGGACAAGG 1343 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | || || ||||||||||| || || Sbjct 1344 CTACGAGCAACATCTGCACTGCTCA 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586504301915840