Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq129087 113 5e-20 seq203825 82.4 8e-11 >seq129087 Length=3483 Score = 113 bits (124), Expect = 5e-20 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 163942 CTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTAC 164001 || || ||||||||| | || ||||| ||||||||||| | || | | |||| ||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 164002 AATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCT 164061 ||||| || || ||||||| ||| |||| ||| || ||| ||| || || || || || Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 164062 CTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTC 164121 | ||||| || ||||| ||| | || |||||| || | | | || || ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 164122 ---CTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATG 164175 ||||| | | ||||| |||| ||| |||| |||||||| || |||||| || Sbjct 425 ATGCTCTTTTGC---CAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq203825 Length=6240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 192/285 (67%), Gaps = 16/285 (6%) Strand=Plus/Minus Query 164120 TCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAG 164179 ||||||| ||| ||||||||||||| ||||| |||||| | || |||| ||||||| Sbjct 2148 TCCTCTTTTTCT---AAGGATTTCATAATTGGACATTGAACTCATTTTATATTATGGGAG 2092 Query 164180 TTGCTGGTATACTAGGCGGAGCATTGCTATCTGC--TATTCACGGAG---TCACAGTTGA 164234 ||| | | || |||| | | |||| | || |||||| || | |||| | Sbjct 2091 TTGTCGATGTATTAGGTGTTACTTTGC--CCGGCAATATTCATGGTGATACCACA----A 2038 Query 164235 AAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACA 164294 |||||| || | | |||||| || | || | || ||| | | ||| || | || | Sbjct 2037 AAATACCTTATTTTAAGATGATGATGA--CATAGACATTTTAAGTTTTTAATCCAACTTA 1980 Query 164295 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGT 164354 | |||| |||||| ||||||| | | ||| || | || | ||||||| || Sbjct 1979 AGGTAAAGAAGTTTATTCAATGGTCATCACTATCCGTTTTTTATCCCTAATCTTCGAGGT 1920 Query 164355 TGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399 | | |||||||| ||| | || | ||||| || ||||| ||||| Sbjct 1919 TACTTTTTCTAATAAGTGTTGATTACATTTCTTTATGTTATTTGT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556117247408800