Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq43099 150 2e-31 seq6114 111 2e-19 seq129087 102 9e-17 seq203261 96.9 4e-15 >seq43099 Length=3685 Score = 150 bits (166), Expect = 2e-31 Identities = 226/321 (70%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 169162 AGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGT 169221 |||| || ||||||||||| | || |||||||| | || | |||||| | ||| | Sbjct 2249 AGGAAACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTT 2190 Query 169222 TCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGA 169281 | ||||| | ||||| ||||||||| || | || || || | | | | |||| Sbjct 2189 TTTCCAATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGA 2130 Query 169282 CAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 169341 ||| | | || | ||||||| ||||| ||| | |||| ||| |||| ||||||| Sbjct 2129 TGAGTGCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCC 2070 Query 169342 AAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCT 169401 |||| ||| | || |||||||| || ||||||| ||||||||||| || || |||| Sbjct 2069 AAGAAATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCT 2010 Query 169402 TGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGT 169461 | || |||||| ||| | | ||| | ||| | ||||| ||| |||| ||| || | | Sbjct 2009 TAAATGAAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATAT 1950 Query 169462 TCCCTGAGGAAGTACTTCCCC 169482 || ||||||| || | |||| Sbjct 1949 TCTCTGAGGAGGTTATACCCC 1929 >seq6114 Length=3795 Score = 111 bits (122), Expect = 2e-19 Identities = 179/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 169161 GAGGAGACCTATTCAATGGTTACTGCA--AACCGTTTCTGGTCTCAGATCTTTGGTATTG 169218 || || || |||||||||||| | || || | ||| |||| || |||||||| ||| Sbjct 1947 GAAGAAACTTATTCAATGGTT--TTCATTAATCATTTTTGGTTCCAAATCTTTGGGGTTG 1890 Query 169219 CGTTCAGTAATAAGAGGT-GGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTT 169277 | || ||||| || |||| |||| |||||| ||||||| || || | | | | Sbjct 1889 CTTTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCAGTAACCGATTTA 1830 Query 169278 TGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTT 169337 |||| ||| || | | | | || |||| ||| | | ||| |||||||||||| Sbjct 1829 TGGATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCCTATGACTTTGTT 1770 Query 169338 TCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATC 169397 | |||||| || | || || ||||||| | |||||||| ||||||| ||| ||||| Sbjct 1769 TTCCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTACATCAAAAACATT 1710 Query 169398 CTCTTGAACGAAGG 169411 ||||| || ||||| Sbjct 1709 CTCTTAAAAGAAGG 1696 >seq129087 Length=3483 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 168804 CTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTA 168862 ||||| ||||||||| | ||||| || ||||| || || | | || | | || || || Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAAT-TGCGACCTTA 303 Query 168863 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 168922 |||||| || || ||||||| ||| || | |||||||||| || || || || || || Sbjct 304 CAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 363 Query 168923 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATT 168982 | ||||| || ||||| | | | || ||| || || | | || || ||||| Sbjct 364 ATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATT 423 Query 168983 CCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATG 169037 | | ||||| ||||| || | ||| ||||| |||| |||||||||||| || Sbjct 424 CATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq203261 Length=8816 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/132 (76%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 ||| || || |||||||| ||||||| |||| |||| ||| |||||||||||| Sbjct 1355 TCTAGGAATATCTGGTACCTTCAACTTCATGATTGTGTTC--------GCACAACATCCT 1304 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 |||||| | ||||||||| | | | | || ||||||| |||||| || ||||||| Sbjct 1303 TATGCACTCATTCCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGT 1244 Query 167678 AATGCACGGTTC 167689 ||||||||||| Sbjct 1243 TATGCACGGTTC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559133292625600