Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq129087 140 4e-28 seq159223 107 2e-18 seq203825 95.1 1e-14 >seq129087 Length=3483 Score = 140 bits (154), Expect = 4e-28 Identities = 175/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 183502 CTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTAC 183561 || || ||||||||| | || || || ||||||||||| || || | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 183562 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCA 183621 ||||| || || ||||||| ||| |||| ||||||||| ||||||||| || |||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 183622 CTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC 183681 | ||||||||| ||| ||| || |||||||| || |||| | | || ||| ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 183682 ---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATG 183735 || || | || ||||||| | || |||| || ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCC--AAGGGTTT-CGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq159223 Length=5599 Score = 107 bits (118), Expect = 2e-18 Identities = 257/384 (67%), Gaps = 20/384 (5%) Strand=Plus/Minus Query 183720 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACT---CAGTGCT-- 183774 ||| || |||||||||||||||| | ||||||| ||||| | | || || Sbjct 3444 CCCATTTCATATGATGGGAGTTGTCAATGTACTAGG-----CACTAATTTGCCGTACTCT 3390 Query 183775 ATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTC 183834 || ||||||| | |||||| |||| |||| ||||||||| || ||||| ||||| Sbjct 3389 ATTCATGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTC 3330 Query 183835 AAGGCATTTGATT-------CCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAA 183887 || || ||| | ||||| ||||| || ||||| || ||| || Sbjct 3329 TAGCTTTTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAA 3270 Query 183888 TCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAG-CGTTGGTTGCACTTCT 183946 ||||| |||| ||||||||| || |||| ||| |||||| |||||||| | || | Sbjct 3269 CCGTTTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTT 3210 Query 183947 TTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTG 184006 ||||||||||||| || | | | | | ||| | | || |||| | ||| || Sbjct 3209 TTATGTTGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGATCTAT 3150 Query 184007 CTCTTAATCTTCGTGCTTATGATTTTGTAAGTC-AAGAGATCAGAGCAGCAGAAGATCCA 184065 |||| || | | ||| ||||| ||| | || |||| ||| | |||| ||||| Sbjct 3149 CTCTAAAATTACATGCCTATGACTTTATTTTTCAAAGAAATCTGTATAGCAAAAGATTGT 3090 Query 184066 GAATTTGAGACGTTCTACA-CAAA 184088 ||| |||||| || |||| |||| Sbjct 3089 AAATATGAGACTTTTTACATCAAA 3066 >seq203825 Length=6240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 270/407 (66%), Gaps = 11/407 (3%) Strand=Plus/Minus Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615 |||| ||||| || | ||| || | | |||||| ||||||| ||||| | || Sbjct 2273 CCTTGTAATGCAATCACACTCTTTGTTTCAATTGCTATTTTTGTTTAGGTATTT-TAATT 2215 Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675 |||| | | ||||| | || | ||||||| |||| || || ||| || || ||| Sbjct 2214 TATCTATTAGGTCAAT-TTGGTTGTTCTTTATGCCTAATTCTGGTGTAACAAATATATTT 2156 Query 183676 AGATTC---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732 ||||| || || ||| | ||| |||| | || ||||| || ||| | || |||| Sbjct 2155 TGATTCATCCTCTTTTTC--TAAGGATTTC-ATAATTGGACATTGAACTCATTTTATATT 2099 Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792 |||||||||| | | || |||| | | | | | | ||| ||||||| || | Sbjct 2098 ATGGGAGTTGTCGATGTATTAGGTGTTACTTTGCCCGGCAATATTCATGGTGATACCACA 2039 Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852 | ||||| || | | |||||| || | || | ||||| | | ||| || | ||| Sbjct 2038 AA-AATACCTTATTTTAAGATGATGATGA--CATAGACATTTTAAGTTTTTAATCCAACT 1982 Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912 ||| |||| ||||| ||||| | | | ||||| | || | |||||||| | Sbjct 1981 TAAGGTAAAGAAGTTTATTCAATGGTCATCACTATCCGTTTTTTATCCCTAATCTTCGAG 1922 Query 183913 GTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183959 ||| | ||| |||||| |||| || || ||||||||||| ||||| Sbjct 1921 GTTACTTTTTCTAATAAGTGTTGATTACATTTCTTTATGTTATTTGT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610086903087200