Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq43099 154 2e-32 seq6114 105 8e-18 seq129087 98.7 1e-15 seq159223 86.0 7e-12 >seq43099 Length=3685 Score = 154 bits (170), Expect = 2e-32 Identities = 253/365 (69%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| |||||||| || ||| || | | ||| || | ||||| | Sbjct 2300 AAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAACTT 2241 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||||||||| | || ||||| | || || | ||||| | ||| ||| |||| Sbjct 2240 ATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATA 2181 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968 | | ||||| ||||||||| || | || || || | | | | |||| ||| | Sbjct 2180 AATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTC 2121 Query 166969 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAA 167028 | || | ||||||| ||||| ||| | |||| ||| |||| |||||||||||| | Sbjct 2120 TTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCC 2061 Query 167029 GGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088 | || || |||||||| ||||| | ||||| ||||| || |||||||| ||||| | Sbjct 2060 ATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAAG 2001 Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148 |||| | | |||||||||||| | ||||| ||| |||| | | ||||| |||| | Sbjct 2000 GTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAGG 1941 Query 167149 AGGTT 167153 ||||| Sbjct 1940 AGGTT 1936 >seq6114 Length=3795 Score = 105 bits (116), Expect = 8e-18 Identities = 177/255 (69%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 166839 GAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCG 166898 |||||||| |||||||||||| || | | ||||| || ||||| || |||| Sbjct 1947 GAAGAAACTTATTCAATGGTTTTCATTAATCATTTTTGGTTCCAAATCTTTGGGGTTGCT 1888 Query 166899 TTTAGTAATAAGAGGT-GGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTG 166957 ||| ||||| || |||| |||| |||||| ||||||| || || | | | | || Sbjct 1887 TTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCAGTAACCGATTTATG 1828 Query 166958 GACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTC 167017 || ||| || | | | | || |||| ||| | | ||| ||||||||||||| Sbjct 1827 GATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCCTATGACTTTGTTTT 1768 Query 167018 CCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCT 167077 ||||||| | | || || | |||||| | ||||| || ||||| | ||| |||||||| Sbjct 1767 CCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTACATCAAAAACATTCT 1708 Query 167078 CTTGAATGAGGGTAT 167092 ||| || || || || Sbjct 1707 CTTAAAAGAAGGCAT 1693 >seq129087 Length=3483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 166482 CTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTAC 166541 ||||| ||||||||| | || || || ||| | ||||| | || | || || ||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 166542 AATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCT 166601 ||||||||||| || |||| ||| |||| ||| || ||| ||| || || || || || Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 166602 CTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTC 166661 | ||||| || ||||| | | | || ||| || || | | || || |||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 166662 CTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATG 166715 | || || ||||| || | || ||||| ||||||||||||||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq159223 Length=5599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 254/390 (65%), Gaps = 9/390 (2%) Strand=Plus/Minus Query 166700 CCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCA 166759 |||||||||||||||||| || | | | || || | |||| | | || || Sbjct 3444 CCCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGTACTCTATTCA 3385 Query 166760 TGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGC 166819 ||||| || |||||| || | ||| | |||||||||| |||||| | ||| || Sbjct 3384 TGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTCTAGCT 3325 Query 166820 ATTCGACT-------CTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCT 166872 || | | | ||||| |||||||| |||||||| ||| ||||| | Sbjct 3324 TTTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAACCGTT 3265 Query 166873 ATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT-AAGAGGTGGTTGCATTTCTTTATG 166931 ||||| || |||||| | ||||| ||| ||| || | ||||| |||| |||||| Sbjct 3264 TTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATG 3205 Query 166932 CTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTC 166991 ||||||| || | | | | | |||| ||| | | || | ||| ||| |||| Sbjct 3204 TTGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGATCTATCTCTA 3145 Query 166992 AACCTTCGTGCTTATGACTTT-GTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTT 167050 || | | ||| ||||||||| ||| | ||||| | | |||| | ||| | | | Sbjct 3144 AAATTACATGCCTATGACTTTATTTTTCAAAGAAATCTGTATAGCAAAAGATTGTAAATA 3085 Query 167051 TGAAACCTTCTATACCAAGAACATTCTCTT 167080 ||| || || || | ||| || ||||||| Sbjct 3084 TGAGACTTTTTACATCAAAAATCTTCTCTT 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562178062082560