Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq74520 105 8e-18 >seq74520 Length=9548 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||| | || | || | || ||| || ||||| ||| Sbjct 3615 CCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCCA 3674 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||||||| | || | || ||| || ||| Sbjct 3675 TTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGAA 3734 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || || | ||||||| || || || ||||| ||| Sbjct 3735 ACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATATT 3794 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 3795 CCTTCAATACTATCATCTTTCAT 3817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560630144696160