Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq161624 87.8 5e-13 >seq161624 Length=13970 Score = 87.8 bits (96), Expect = 5e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 ||||| || ||||||||||| ||| || ||||| || |||| || || |||||||| Sbjct 9945 TGGAATGGGTGCATAAGGATGATGTACTCAGCCTGGAATACAATTATGAAGTTGAAAGTA 9886 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 | ||| || |||||||||| || ||| || | ||| || | ||| || ||| Sbjct 9885 TCAAAAAGTCCTAGAGGCATACAATTAGAAAAGTTTTATTGACCGATTAGGTTGATCAAG 9826 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 || ||| || | || ||||| | | |||||| || ||| ||||| || | |||| Sbjct 9825 AAAACAACAGTAGTAACTACAACAAGAGTTGAATATGCAACAACAATCCAAGGGCGCATA 9766 Query 36591 CCTAGTCTATAACTAAGTTCCCA 36613 | || | | | ||||||||||| Sbjct 9765 TCCAGACAAAATCTAAGTTCCCA 9743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150078411069176