Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq207794 116 3e-21 seq127437 116 3e-21 seq44755 113 3e-20 seq84576 111 1e-19 seq9834 102 6e-17 seq45179 100 2e-16 seq73220 93.3 3e-14 seq138849 82.4 6e-11 seq56209 82.4 6e-11 >seq207794 Length=1432 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| |||||||||| ||| | ||| | || ||| Sbjct 679 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 738 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| || || | ||| ||||| | || | || |||||||| | Sbjct 739 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 798 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | | ||||| ||||||||| | |||||||| ||| Sbjct 799 ATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTAATCGTCTTT 858 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || ||||| |||||||| Sbjct 859 CCCGTCAGGGTCTTCACAAATATCTGCAT 887 >seq127437 Length=6100 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || ||||| |||||||||| || | ||| | || ||| Sbjct 1804 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 1863 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| ||||| | ||| ||||| | || | ||||||||||| | Sbjct 1864 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 1923 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | | ||||| ||||||||| | || ||||| ||| Sbjct 1924 ATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 1983 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || ||||| |||||||| Sbjct 1984 CCCGTCAGGGTCTTCACAAATATCTGCAT 2012 >seq44755 Length=3421 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| |||||||||| ||| | ||| | || ||| Sbjct 1847 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 1906 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| || || | ||| ||||| | || | || |||||||| | Sbjct 1907 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 1966 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | | ||||| ||||||||| | |||||||| ||| Sbjct 1967 ATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTAATCGTCTTT 2026 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||| || || ||||| ||||||||| Sbjct 2027 CCTGTCAGGGTCTTCACAAATATCTGCATC 2056 >seq84576 Length=1122 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || ||||| |||||||||| || | ||| | || ||| Sbjct 803 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 862 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| ||||| | ||| ||||| | || | ||||||||||| | Sbjct 863 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 922 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | | ||||| ||||||||| | || ||||| ||| Sbjct 923 ATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 982 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| |||||||| Sbjct 983 CCTGTCAGGGTCTTCACAAATATCTGCAT 1011 >seq9834 Length=2319 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||| |||||||||| ||| |||| Sbjct 272 AGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGC 213 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||||| ||| || || | |||| || ||| Sbjct 212 CCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCC 153 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | || || || ||||||| || Sbjct 152 TTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTG 93 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||| ||||||||||||||| Sbjct 92 ATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 54 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTT 48670 || |||| |||||| ||||| || ||||| | ||| ||||||| ||||| | |||||||| Sbjct 437 TCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTT 379 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| ||||||| ||| ||| | | | | || || ||||||||||| ||| || Sbjct 378 GTCCTGAATCTTTGCTTTGACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGAT 319 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| || || || || || ||||| Sbjct 318 GGTCTTTCCAGTCAGTGTCTTCACGAAGATTTGCAT 283 >seq45179 Length=1454 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || ||||||||||| | || |||| | || || Sbjct 804 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 863 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||||||||| ||||| | ||| || |||| |||| ||||||||||| Sbjct 864 AGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 923 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || || || |||| ||||| || ||| Sbjct 924 ATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTT 983 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||| || ||||| ||||||||| Sbjct 984 CCTGTAAGAGTCTTCACAAATATCTGCATC 1013 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || |||||| || |||||||| |||| || |||| Sbjct 567 AGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCAGCGAGGGTTCGG 626 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || ||||| | ||| || |||| |||| ||||||| Sbjct 627 CCATCTTCAAGCTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCC 686 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || || ||||||| || Sbjct 687 TTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTG 746 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||| ||||||||||||||| Sbjct 747 ATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 785 >seq73220 Length=12354 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | | | || | || || | |||||| || |||||| Sbjct 6497 TCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAAT 6556 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | ||||||||||| ||||||| || ||| | Sbjct 6557 ATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTA 6616 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || |||||||| || |||| || || ||| Sbjct 6617 TCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATCGTTTTACCTGTCAGGGTCTTCACA 6676 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 6677 AAAATCTGCAT 6687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| |||| || | ||||| || || ||| |||||| || || || ||||||| Sbjct 7372 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 7431 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || || | ||||||||| |||||||| || | ||| || || | ||| Sbjct 7432 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 7491 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| || || ||| ||| | | | | ||||| ||| || Sbjct 7492 AATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 7551 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | || || |||||||| ||||| Sbjct 7552 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7599 >seq138849 Length=4585 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || |||||||| || | Sbjct 1459 CGCCACCACGGAGGCGAAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 1400 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| |||| |||| |||| ||| || || || || || || ||||| || |||| | Sbjct 1399 CTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 1340 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||| |||||||| ||||| || ||| | | | | || || | || | Sbjct 1339 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAA 1280 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || ||||| || ||||| | || || || |||||||||||| Sbjct 1279 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 1230 >seq56209 Length=7549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || |||||||| || | Sbjct 2976 CGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 2917 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| |||| |||| |||| ||| || || || || || || ||||| || |||| | Sbjct 2916 CTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 2857 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||| |||||||| ||||| || ||| | | | | || || | || | Sbjct 2856 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAA 2797 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || ||||| || ||||| | || || || |||||||||||| Sbjct 2796 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 2747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379960576481412