Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq43099 116 4e-21 seq129087 93.3 5e-14 >seq43099 Length=3685 Score = 116 bits (128), Expect = 4e-21 Identities = 238/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 165249 GCAAATACCTTTAAGGCGTTTGATTCGAC--ACAGGAAGAAGAGACTTATTCTATGGTCA 165306 |||||||| ||| ||| ||| || | || | | ||| || |||||||| ||||| | Sbjct 2286 GCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAG--GAAACTTATTCAATGGTAA 2229 Query 165307 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTC 165366 || ||||| || | || | ||||| | ||| ||||| || || | ||| | | Sbjct 2228 TCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATAAATGTTGGTTAC 2169 Query 165367 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTG 165426 |||| || |||| || || || | | | | |||| || |||| | ||| Sbjct 2168 ATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTCTTGGAGTAGTTG 2109 Query 165427 GTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAG 165486 |||| ||||| ||| | |||| || | ||||| || || ||| | || |||| Sbjct 2108 GTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCCATGTAGTGGAAG 2049 Query 165487 ATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTT 165546 |||| |||||||||| |||||||||||||| || || || |||||||| | | | ||| Sbjct 2048 ATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCATACTT 1989 Query 165547 GGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 || ||||| | ||||| || |||||||| |||| ||| | || || || Sbjct 1988 GGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAGGAGGT 1937 >seq129087 Length=3483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 164928 CTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTAC 164987 ||||| ||||||||| | || || || || || || || | || | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 164988 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCA 165047 ||||| || || ||||||| ||| |||| ||||||||| || ||||| || || ||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 165048 CTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 165107 | |||||||| ||||| | | | || ||||| || | | | || ||| ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 165108 CTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATG 165161 || | || ||||| || | || |||| | ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561728048986720