Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq129087 136 4e-27 seq43099 125 7e-24 seq161624 107 2e-18 seq200956 93.3 4e-14 >seq129087 Length=3483 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 10137 TAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACA 10196 |||| || || |||||||| || || || || || |||| || | | |||||||||| Sbjct 246 TAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTACA 305 Query 10197 ATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCAC 10256 |||| ||||| || |||| || |||| ||||||||| ||| ||||| || |||||| Sbjct 306 ATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCAT 365 Query 10257 TCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCC 10316 | || |||||| ||||| ||| || ||| ||||| || || | | || || || ||| Sbjct 366 TAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTCA 425 Query 10317 TTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATG 10369 | ||||| ||| || |||| |||| |||| | || || || |||||| || Sbjct 426 TGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq43099 Length=3685 Score = 125 bits (138), Expect = 7e-24 Identities = 222/321 (69%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 10443 AAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCT 10502 ||||||| || ||||| || || |||||| || ||| || | || || | Sbjct 2300 AAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAACTT 2241 Query 10503 ATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATA 10562 |||| ||||| | ||||||||||| | ||| | || ||| | ||| |||| ||||| Sbjct 2240 ATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATA 2181 Query 10563 AACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTA 10622 || | ||| | ||||||||| || | || ||||| | | | | |||| | || Sbjct 2180 AATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTC 2121 Query 10623 TTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATC- 10681 ||||| | ||||||| ||||| || | |||| || | || || || ||||| ||| Sbjct 2120 TTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCC 2061 Query 10682 AGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAA 10741 | | || ||||||||||||||||||| ||||| || || ||||| || | || ||| Sbjct 2060 ATGTAGTG-GAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAA 2002 Query 10742 GGTCTTCGTGCATGGATGGCA 10762 ||| ||| | | ||||||||| Sbjct 2001 GGTATTCATACTTGGATGGCA 1981 >seq161624 Length=13970 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||| ||| ||||||||| | | || | ||||| |||||||| ||||||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || ||| ||||| | | || ||| ||| ||| | || | | | |||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 || ||| || |||||||||| || | | | ||| ||||||| || |||| |||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACA 8794 |||||| ||| |||||| |||||||| ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 >seq200956 Length=1523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 174/255 (68%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 10499 ACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC 10558 || ||||| ||||||| ||| ||| | || || || ||||| ||| |||| | Sbjct 14 ACTTATTCAATGGTTATCAATAATTATTTTTTGTATCACATCTTTGGGGTTGATTTTTCC 73 Query 10559 AATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTT--GGACCT 10616 ||||||| | | | ||||||||||| | ||| || | || | | ||| ||| Sbjct 74 AATAAACATTAGTTACATTTCTTTATATTATTTATAGGAATAATCGATTTTTATGGATAA 133 Query 10617 CTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAG 10676 | || ||||| || || | ||||| ||| | ||||||| || ||||| | ||| Sbjct 134 GTGCTCTTGGAGCAATCTGTTTGGCTCTGAATTTATGTGCTTATGACTTTGTTTTCTAAG 193 Query 10677 AGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGA 10736 | || | | |||||| |||||||||||| |||||||| || ||||| ||| | | Sbjct 194 AAATTTGTGA-----AAGATCATGAATTTGAGACTTTCTATACAAAAAATATTCTTTTAA 248 Query 10737 ACGAAGGTCTTCGTG 10751 |||||||| || ||| Sbjct 249 ACGAAGGTATTTGTG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515121373536000