Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq44755 105 6e-18 seq207794 100 2e-16 seq127437 91.5 1e-13 seq73220 91.5 1e-13 seq76562 84.2 2e-11 >seq44755 Length=3421 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| || ||| ||| || Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 2225 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 2224 TGACACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 2165 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| | || ||| | ||| |||| ||||| || Sbjct 2164 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 2105 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| ||||| ||||| ||| | || | | | || |||||||| Sbjct 2104 CATTCAAAAGGAATCCACTCTTCACCTAGTTCTTCGCCTTCGTGGAGGGAT 2054 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| ||| ||| || || Sbjct 2740 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2681 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || || | | || | ||| |||||| ||||| || ||| | ||| || || Sbjct 2680 CGATACAGTTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACCA 2621 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || || || | || ||| | ||| |||| |||||||| Sbjct 2620 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACGTTGGCAGATTATAA 2561 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| || || || || |||||| |||| Sbjct 2560 CATTCAGAAGGAGTCCACACTGCACCTGGT 2531 >seq207794 Length=1432 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| || ||| ||| || Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 1057 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| ||| ||| ||||| ||||| | ||| ||||| Sbjct 1056 TGACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCA 997 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| | || ||| | ||| |||| ||||| || Sbjct 996 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 937 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || || ||| |||| Sbjct 936 CATTCAAAAGGAATCCACCCTTCACCTGGT 907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| ||| |||| || || ||||| || || |||| || Sbjct 1344 AATGCAAATATTTGTAAAGACACTAACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 1285 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| ||||||| ||||| || ||| | ||| ||| || Sbjct 1284 TGATACAATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 1225 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || || || | || ||| | ||| |||| |||||||| Sbjct 1224 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 1165 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || || || || ||| Sbjct 1164 CATTCAGAAGGAGTCCACACTCCAC 1140 >seq127437 Length=6100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| ||| ||| || || Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2638 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| |||||| ||||| || ||| | ||| ||||| Sbjct 2637 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 2578 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || || || | || ||| | ||| ||||||||||||| Sbjct 2577 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 2518 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| ||||| || || || ||| |||| Sbjct 2517 CATTCAGAAAGAGTCCACACTCCACCTGGT 2488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| || | || || || ||||| || || ||| || Sbjct 2241 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTC 2182 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| || ||| ||||| ||||| | ||| |||||| Sbjct 2181 TGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 2122 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| | || ||| | || |||| ||||| || Sbjct 2121 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTGGCTGATTACAA 2062 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| ||||| ||||| || || ||| Sbjct 2061 CATACAAAAGGAATCCACCCTTCAC 2037 >seq73220 Length=12354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| ||||| |||| || || ||||| || ||| || ||| Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| ||| ||| ||||| ||||| | || ||| || Sbjct 7768 AGATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 7709 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || |||| ||| || |||| |||||||| Sbjct 7708 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 7649 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || || || || || || ||| |||| Sbjct 7648 CATCCAGAAGGAGTCCACCCTTCACTTGGT 7619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || || |||||||| || ||| || ||| Sbjct 8055 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 7996 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||||| ||||| ||||| | ||| || || Sbjct 7995 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 7936 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | || ||||| || || || | || ||| || ||| |||||||||||||| Sbjct 7935 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 7876 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || || || ||| | ||| | | || ||||||| || Sbjct 7875 ATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAAT 7826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| |||||||| || || ||| || ||| Sbjct 6915 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 6856 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| |||||| ||||| || || | || || ||| Sbjct 6855 GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 6796 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || ||||| | || ||| ||| ||||||| || ||| Sbjct 6795 CAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCCGACTACAAC 6736 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||||||||| || ||| Sbjct 6735 ATACAGAAAGAATCTACGCTTCAC 6712 >seq76562 Length=2025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | || ||||| |||||||||||||||||| | ||| | || ||| Sbjct 1781 GATCAGCAGAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTTGCAGAT 1722 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||| |||||||| || || || ||| | || || || Sbjct 1721 TATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTGAG 1681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424313727618276