Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq129087 100 3e-16 seq34924 91.5 2e-13 seq161624 89.7 6e-13 seq203261 87.8 2e-12 seq204425 82.4 8e-11 seq156341 82.4 8e-11 seq50242 82.4 8e-11 >seq129087 Length=3483 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 162437 ACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTA 162496 ||| |||||||||||| | || || || ||||| || ||| || | | || ||||| Sbjct 244 ACTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTA 303 Query 162497 CAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCC 162556 |||||| || || ||||| | ||| |||| ||| || ||| ||| || || || ||||| Sbjct 304 CAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 363 Query 162557 TTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 162616 || || || || ||| ||| | || || || || | | | || || ||||| Sbjct 364 ATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATT 423 Query 162617 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATG 162671 | ||||||| ||||||||| | ||| |||| | || || ||||| ||| || Sbjct 424 CATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq34924 Length=1951 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||||||||| | ||||| | || || | ||||| ||||| ||| | || || Sbjct 741 TACATCCTTGATTCGGCTGAAAATGCAGGACTGGAACTGCCATACTCATGCAGGGCTGGA 800 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || | | || || || | || |||||| || || Sbjct 801 GCCTGCTCAACCTGTGCAGGGCAGATGGTGTCGGGATCTGTCGACCAATCAGATGGATCA 860 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| ||||| | ||||| ||| ||||| | | ||||| |||||||| || || ||| Sbjct 861 TTCCTTGACGAGAAGCAAATGGATAATGGTTACGTGCTGACCTGTGTTTCATACCCAACA 920 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 || ||||| ||| | ||| ||||||||| ||| || || ||| Sbjct 921 TCAGACTGTGTAATTCATACTCACAAGGAAGGGGATCTCTACTGA 965 >seq161624 Length=13970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 161209 GGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATAC 161268 |||| ||||||||||||| | |||||| ||||| ||||||||| || ||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 161269 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 161328 || ||| ||| | | | | || || ||| || || | | |||||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 161329 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAA 161388 || ||| || |||||||| || | | || ||| ||||||| ||| |||| ||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 161389 GCAGAGCACAACATTCTCATGCACCCCTTCCA 161420 || ||| ||| ||| || |||||||| ||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCA 9945 >seq203261 Length=8816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 161346 TCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCT 161405 ||| || || |||||||| ||||||| |||| |||| ||| ||||||||| || Sbjct 1355 TCTAGGAATATCTGGTACCTTCAACTTCATGATTGTGTTC--------GCACAACATCCT 1304 Query 161406 CATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGC 161465 |||||| | ||||||||| | | | || | ||| || | |||||| || ||||||| Sbjct 1303 TATGCACTCATTCCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGT 1244 Query 161466 AATGCACGGTTC 161477 ||||||||||| Sbjct 1243 TATGCACGGTTC 1232 >seq204425 Length=9683 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 158383 TACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTA 158442 |||||||||||||| || |||| || || || || || | | || ||||| || Sbjct 496 TACTCGTGCCGTGCTGGGTCTTGCTCCTCCTGCGCCGGGAGGGTGGTGGAAGGCACTGTG 555 Query 158443 GACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACT 158502 || || ||| | |||||| || ||||| || || || ||| | |||||||| Sbjct 556 GATCAGTCTGACGGGAGCTTCCTTGAGGATGAGCAGATGGAGGATGGATGGGTTCTGACT 615 Query 158503 TGTGTTTCTTATCCTACAAGT--GATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 |||||| |||||||| ||| ||| |||||||||||| ||||||| ||||| || Sbjct 616 TGTGTTGCTTATCCT--CAGTCCGATCTTGTGATTGAGACCCACAAGGAGGAGGAGCT 671 >seq156341 Length=792 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 698 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 639 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 638 CCTGTCATCCCTACCTAT 621 >seq50242 Length=1831 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||||||||| | ||||| | ||||| | ||||| ||||| ||| | || || Sbjct 685 TACATCCTTGATTCGGCTGAAAATGCGGGACTGGAACTGCCATACTCATGCAGGGCTGGA 744 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || | | || || || | || || ||| || || Sbjct 745 GCCTGCTCAACCTGTGCAGGGCAGATGGTGTCGGGATCTGTCGATCAATCAGATGGATCA 804 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| ||||| | ||||| ||| ||||| | | ||||| |||||||| || || || Sbjct 805 TTCCTTGACGAGAAGCAAATGGATAATGGTTACGTGCTGACCTGTGTTTCATACCCAACT 864 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 || | ||| ||| | ||| ||||||||| ||| || || ||| Sbjct 865 TCAGACTCTGTAATTCATACTCACAAGGAAGGGGATCTCTACTGA 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546306323603040