Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq43099 149 8e-31 seq129087 120 4e-22 seq6114 107 2e-18 seq127763 98.7 1e-15 >seq43099 Length=3685 Score = 149 bits (164), Expect = 8e-31 Identities = 255/368 (69%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 101731 ACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATC--GACTGGTGCCAACCATGCAC 101788 ||||| |||| |||| || |||||||| || ||||| || | ||||| ||| | | Sbjct 1937 ACCTCCTCAGAGAATATAAGGTTTTCATAAGGCTGATCTTGAAT--TGCCATCCAAGTAT 1994 Query 101789 GTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTG 101848 | | ||||||||| || || || || || |||||||| |||| || || |||||||| Sbjct 1995 GAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAAAATCTCAAATTCAGGATCTTCCA 2054 Query 101849 CTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAA 101908 || | ||| |||||||| || |||| ||| |||| | ||| ||||| ||||||| | Sbjct 2055 CTACATGGATTTCTTGGGAAACGAAGTTATAGACACGTAAGTTTAGAGCTAGACCAACTA 2114 Query 101909 TACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACC 101968 || | | ||| |||| | | | | || || || | || ||||||||| |||| Sbjct 2115 CTCCAAGAGCACTCATCCATAAATTGGTTATTGGTACCAATAACACAAAGAAATGTAACC 2174 Query 101969 ACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCA 102028 | | ||||| ||| ||| | |||||||| || | |||||||| || | |||| Sbjct 2175 AACATTTATTGGAAAAAACAACCCTAAAGATTTAGGATAAAAAACGGTTAGCGATTACCA 2234 Query 102029 TTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCAC 102088 |||||||||| || | || || | || || || || || ||||| ||||| Sbjct 2235 TTGAATAAGTTTCCTTAGTTTAAGTTGGATTAAAAGCCCGAAATGTATTTGCACCATCAC 2294 Query 102089 CATCTTCA 102096 |||||||| Sbjct 2295 CATCTTCA 2302 >seq129087 Length=3483 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 102168 CATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCT 102227 || |||||| |||||||| | |||| ||| | || || || ||||| | ||||| Sbjct 478 CAACATATGAAATGGGTTCAATGTCCGATTACGAAACCCTTGGCAAAAGAGCATGAATCG 419 Query 102228 AAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATA 102287 |||||| | | | |||||||| ||| || ||| ||||| ||||| || | ||||| Sbjct 418 AAATATAGTTACTACACCAAAACTAGGCACAGAGAGCCAACCAGACTGACCTAATGGATA 359 Query 102288 GATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGG 102347 || || || ||| ||||||||| | || || ||||||| || || |||||||| || Sbjct 358 AATTAGGAATACAGAAACAAAAACAACAATTGGAGCAGAGAATGCGATTGCATTGTAAGG 299 Query 102348 ACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAG 102401 || | | || || | ||| | ||||||||||| | ||||||||| || || Sbjct 298 TCGCAATTGAACAAATCGAGCAAGTTCGAATTGACGTAACATGAAACCTATTAG 245 >seq6114 Length=3795 Score = 107 bits (118), Expect = 2e-18 Identities = 213/315 (68%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 101794 CCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCT 101853 ||||| || || || ||||| || ||||||| ||||| || | ||||||| || || Sbjct 1696 CCTTCTTTTAAGAGAATGTTTTTGATGTAGAAAGTCTCAAATTTAGGATCTTTTGATGTA 1755 Query 101854 CTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCG 101913 | || |||||| | ||||||||||| ||| | | ||| |||| || | | | | Sbjct 1756 CAAATTTCTTGGAAAACAAAGTCATAGGCATGTAAGTTTAGAGATGGATCGACTACCCTA 1815 Query 101914 ATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTC 101973 || ||| |||| | | | | || || ||||| | |||||| |||| ||||| | Sbjct 1816 GGGGCACTCATCCATAAATCGGTTACTGGTACAAACAACATAAAAAAATATAACCAACGA 1875 Query 101974 TT-ATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGA 102032 || ||| ||| |||| ||||||||||| |||| ||| | || ||||||||| Sbjct 1876 TTTATTGGAAAAAGCAACCCCAAAGATTTGGAACCAAAAATGATTAATGAAAACCATTGA 1935 Query 102033 ATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTG-------TTTGCTTGAT 102085 |||||| ||||| |||||| | || || || ||| | ||||| || Sbjct 1936 ATAAGTTTCTTCAATTTGTGTTGGATTAAAAATTTAAAAACTAGAATGGATTTGCACCAT 1995 Query 102086 CACCATCTTCATACA 102100 ||||||||||| ||| Sbjct 1996 CACCATCTTCAAACA 2010 >seq127763 Length=4742 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871 ||| ||||||||||||| | ||| || || | | |||| ||||| | || | |||| Sbjct 1926 ATCTGAAGTTGGGTATGAAATGCAAGTTAGCAAATAACC--CTTCTCCATCTGCTTGTCA 1869 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || |||||| ||| || || || | ||| || | || | || ||||| ||| Sbjct 1868 TCAAGGAAGGATCCATCAGACTGGTCCACTGAACCTGAAACCATTTGCCCTGCACAGGTA 1809 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || || ||||| | || |||||||| || ||||||||||| || ||||| | |||| Sbjct 1808 GAGCATGCCCCAGCCCTGCAAGAATAAGGTAGCTCAACACCTGCATCCTCAGCTGAGTCT 1749 Query 102992 AGAATATATTGATCATC 103008 | || ||| |||||| Sbjct 1748 AATATGTATGCATCATC 1732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631847110799520