Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq198069 98.7 1e-15 seq191896 95.1 1e-14 seq143880 93.3 5e-14 seq140924 93.3 5e-14 seq17476 89.7 6e-13 seq140923 82.4 9e-11 >seq198069 Length=3607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| || |||||| |||||||||||||| | ||||||||| || || ||||| Sbjct 3143 AAATGGTGCCAGGTGTTTTTTCACACCAATAGGACCCATGCCAGGACCACCTCCACCATG 3202 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 ||||| || ||||| || || | ||| ||||| || ||||| || ||| || ||| Sbjct 3203 GGGAATGCAAAATGTTTTGTGGAGATTGAGATGGCAAACATCAGCTCCAATCCAACCTGG 3262 Query 138281 TTTTGCTAGACCTACCTGT 138299 ||| ||||| |||||| Sbjct 3263 GCTTGTGAGACCCACCTGT 3281 >seq191896 Length=2915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||||| | |||||| |||||||| ||||| | ||| ||||| || || || Sbjct 1260 TAGAAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATGCCCGGACCACCTCCACC 1201 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||| ||||| || ||||||||||| | ||| ||||| || |||||||| ||| Sbjct 1200 ATGGGGAATGCAAAATGTCTTATGAAGATTAAGATGGCAGACATCTGCTCCA 1149 >seq143880 Length=3558 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| ||||| || || | ||||| | || ||| || || | || ||||| || Sbjct 1884 CATTGCCTCAGCTGCCGCTGTCCCCTCATCAAGTAAAGAAGCATTAGACATGGGTAACCC 1825 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| |||| | | || || ||||||| |||| || | || || || ||||| Sbjct 1824 AGTAAGATCTGAAACCATGGTCTGATAATTGAGCAAAGACTCAAGCCTCCCTTGCGATAT 1765 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 |||||||||||| || ||||| || ||||||| || || || | || ||| | | Sbjct 1764 CTCAGCTTGATAAGGCGTGTACTGAGTATACCAACCCGGGTTTTCCATAATGTTCCTCAA 1705 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAA 140082 || || || || || |||||||| || || ||||||| Sbjct 1704 GATCACAGGAGGCACAAGAGTTCCATAATAACCCATCCCTATAA 1661 >seq140924 Length=1667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||||||||| || || || ||||| || | ||||| || ||||| || || Sbjct 1368 TGAGCAGTGCAGATGTTGCTCGTAGCCTTGTCCCTCCGGATATGTTGTTCTCTCGTCTGC 1309 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | ||| | || ||||| || ||| || |||||||| || | |||||| | Sbjct 1308 ATTGCCATTCGCAGAGCAGGCTTTCCTGAAGCATCAACACTGACT--CCAATAATTCTTC 1251 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | ||||| |||| | | || || ||||| |||||||||||||| || | Sbjct 1250 CTGGCATCATCCTCTTGTACTCTTGGGAGGTGGCCAAGAAAGCAGCATGAGGACCACCAT 1191 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCAC 139554 | ||||| || | ||||||| || || ||| ||||||| ||| |||||| Sbjct 1190 ACCCCATCGGTACTCCAAACCGCTGAGCTGAGCCAACAACAATATCTGCCCCCAACTCAC 1131 Query 139555 CT 139556 || Sbjct 1130 CT 1129 >seq17476 Length=3492 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| ||||| || || | ||||| | || ||| || || | || ||||| || Sbjct 1674 CATTGCCTCAGCTGCCGCTGTCCCCTCATCAAGTAAAGAAGCATTAGACATGGGTAACCC 1733 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| |||| | | || || ||||||| |||| || | || || || ||||| Sbjct 1734 AGTAAGATCTGAAACCATGGTCTGATAATTGAGCAAAGACTCAAGCCTCCCTTGCGATAT 1793 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTT 140032 |||||||||||| || ||||| || ||||||| || || || | || ||| Sbjct 1794 CTCAGCTTGATAAGGCGTGTACTGAGTATACCAACCCGGGTTTTCCATAATGTT 1847 >seq140923 Length=1668 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| || || || ||||| || | ||||| || ||||| || || Sbjct 1369 TGAGCAGTGCATATGTTGCTCGTAGCCTTGTCCCTCCGGATATGTTGTTCTCTTGTCTGC 1310 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | ||| | | ||||| || ||| || |||||||| || | |||||| | Sbjct 1309 ATTGCCATACGCAGAGCAGGCTTTCCTGAAGCATCAACACTGACT--CCAATAATTCTTC 1252 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | ||||| |||| | | || || ||||| |||||||||||||| || | Sbjct 1251 CTGGCATCATCCTCTTGTACTCTTGGGAGGTGGCCAAGAAAGCAGCATGAGGACCACCAT 1192 Query 139495 ATCCCATAGGAATACCAAACC 139515 | ||||| || | ||||||| Sbjct 1191 ACCCCATCGGTACTCCAAACC 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577475315758880