Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq129087 136 5e-27 seq161624 93.3 6e-14 seq159223 89.7 7e-13 >seq129087 Length=3483 Score = 136 bits (150), Expect = 5e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23849 CATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCT 23908 || |||||| || ||||| | |||| ||| |||| || ||| ||||| | ||| | Sbjct 478 CAACATATGAAATGGGTTCAATGTCCGATTACGAAACCCTTGGCAAAAGAGCATGAATCG 419 Query 23909 GAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATA 23968 || || | | ||||| ||||| ||| || ||| |||| ||||| || || ||||| Sbjct 418 AAATATAGTTACTACACCAAAACTAGGCACAGAGAGCCAACCAGACTGACCTAATGGATA 359 Query 23969 GATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGG 24028 || ||||||||||| || || ||| |||| ||| |||| || || || |||||||| || Sbjct 358 AATTAGGAATACAGAAACAAAAACAACAATTGGAGCAGAGAATGCGATTGCATTGTAAGG 299 Query 24029 ACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGT 24083 || | | || | || || ||||| || ||||||||||| |||||||| ||| Sbjct 298 TCGCAATTGAACAAATCGAGCAAGTTCGAATTGACGTAACATGAAACCTATTAGT 244 >seq161624 Length=13970 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27170 TGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAG 27229 ||||||| |||||||||||||| ||| || ||||||||||||| ||| |||| |||| Sbjct 9947 TGTGGAATGGGTGCATAAGGATGATGTACTCAGCCTGGAATACAATTATGAAGTTGAAAG 9888 Query 27230 TACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGA 27289 || || | | || ||||||||| || || || |||||||| | | || | Sbjct 9887 TATCAAAAAGTCCTAGAGGCATACAATTAGAAAAGTTTTATTGACCGATTAGGTTGATCA 9828 Query 27290 GGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCA 27349 ||| || || | | | | | || ||| |||||||| ||| ||||| || |||| Sbjct 9827 AGAAAACAACAGTAGTAACTACAACAAGAGTTGAATATGCAACAACAATCCAAGGGCGCA 9768 Query 27350 TACCTAAACGATATGAGAGTTCCCACTCA 27378 || | | || | || |||||||||||| Sbjct 9767 TATCCAGACAAAATCTAAGTTCCCACTCA 9739 >seq159223 Length=5599 Score = 89.7 bits (98), Expect = 7e-13 Identities = 258/391 (66%), Gaps = 21/391 (5%) Strand=Plus/Plus Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTT-GAC 23547 || |||||| |||| || |||||||| || ||||| || || || |||| || Sbjct 3060 AAGATTTTTGATGTAAAAAGTCTCATATTTACAATCTTTTGCTATACAGATTTCTTTGAA 3119 Query 23548 TCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCC 23607 | ||| ||||| ||| | | || |||| || ||| | |||| || | | || Sbjct 3120 AAATAAAGTCATAGGCATGTAATTTTAGAGATAGATCAACTACCCCAAGAGCACTCATCC 3179 Query 23608 AAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACG-CTTATTGCTAAAC 23666 | | | | | | || |||||||||||||| || | |||||||| |||||| ||| Sbjct 3180 ATAAATCGGTTGCTGGTACAAACAACATAAAAAAATATAACCAACGATTTATTGGAAAAA 3239 Query 23667 GCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCC 23726 |||| || ||||||||| |||||||||| || ||| || ||||| || || || Sbjct 3240 GCAATCCTGAAGATTTGGAACCAAAAACGGTTAATGAAAACTATTGAATAAGTTTCTTCA 3299 Query 23727 TCCTGAGTGGAATCGAACGCTTTAAAAG------TG--TTTGCCTGTTCTCCATCTTCAT 23778 ||||| | || || |||||||| || ||||| || ||||||||| Sbjct 3300 CTATGAGTTGGAT-TAAAAATTTAAAAGCTAGAATGAATTTGCACCATCACCATCTTCAA 3358 Query 23779 ACAGTGTATTCTCGACAGTAACTCCATGAATAG----CAG-AGAGAAGTGCTCCTCCCAG 23833 ||| |||| || || || | |||||||||| | | | | |||| || || Sbjct 3359 ACAACTTATTTTCTACTATAGCACCATGAATAGAGTACGGCAAATTAGTG-----CCTAG 3413 Query 23834 TATACCAGCAACTCCCATCATATGGAAGGGG 23864 || | |||||||||||||||| || ||| Sbjct 3414 TACATTGACAACTCCCATCATATGAAATGGG 3444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663743783706080