Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq90559 113 5e-20 seq74520 95.1 1e-14 seq203223 89.7 6e-13 seq82795 89.7 6e-13 >seq90559 Length=17024 Score = 113 bits (124), Expect = 5e-20 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || ||| |||| | || || ||| || ||| |||||| Sbjct 5808 CCCGGAACCGGCAAGACCCTACTGGCCAGAGCAGTGGCCGGAGAAGCAGGTGTGCCATTC 5867 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | ||| | | || || || ||||||| || ||||| || || || Sbjct 5868 TTCTCGTGCGCAGCCTCTGAATTCGTTGAATTGTTTGTAGGAGTGGGAGCATCCAGAGTC 5927 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 || || | ||||| | || |||||||| || || ||||| |||||||||| Sbjct 5928 CGGGACTTGTTTGAGAAGGC-----AAAATCAAAGGCACCCTGCATTGTGTTCATTGATG 5982 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| ||||| | ||| | | || ||| | | ||||| ||||||| Sbjct 5983 AAATTGATGCAGTGGGGAGGCAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAG 6042 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | ||||| |||||||| || | || ||||||||||| || Sbjct 6043 AGCAAACCATTAATCAGCTGTTGACAGAGATGGATGGATT 6082 >seq74520 Length=9548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | || |||||||||| ||||||||||||||| | ||| || | | Sbjct 4244 CGGGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCCTGAAG 4185 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | | || | | | |||| || ||| ||||||| ||| | || | | || || Sbjct 4184 ATTCAAGGGAAGGTTGTAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATT 4125 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| ||| ||||||||||||| | | |||||| | ||||| || || |||| Sbjct 4124 CACAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTC 4065 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || | || || || |||||||| || |||||||| || || Sbjct 4064 ACTCATGCTTCGCCCACTCTTTTCAATGCAGGAACACCAAGGCCCCA 4018 >seq203223 Length=1923 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||||| ||||| | || || || || ||||| || |||||||||||||| | Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 221 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | ||||| || ||||||||||| || || ||||| |||| Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCGAATG 281 Query 65189 AACTTATTTCCCGAGATGAGGG 65210 | | || || ||||| ||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 >seq82795 Length=1924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||||| ||||| | || || || || ||||| || || ||||||||||| | Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCT 221 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | ||||| || ||||||||||| || || |||||||||| Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 281 Query 65189 AACTTATTTCCCGAGATGAGGG 65210 | | || || ||||| ||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595000293838720