Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq208434 95.1 1e-14 seq129087 93.3 5e-14 seq159223 84.2 2e-11 >seq208434 Length=3260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 29 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 88 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 |||||||||||||| ||||||| Sbjct 89 GGTTCAAATCCTACTTGGGGAG 110 >seq129087 Length=3483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 167335 CTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTAC 167394 || || ||||||||| | || || || ||||||||||| | || | || || ||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 167395 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCC 167454 ||||| || || ||||||| ||| |||| ||| || ||| || ||||| | ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 167455 CTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTC 167514 | ||||| | ||| ||| || || || || || | | || || |||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 167515 CTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATG 167568 | ||||| |||||| || | || ||||| |||| |||||||||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq159223 Length=5599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/251 (68%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 167554 CCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCAT 167613 ||||||||||||||||| || | | | || || | |||| | | || ||| Sbjct 3443 CCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGTACTCTATTCAT 3384 Query 167614 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAA--CA------CTT 167665 |||| || |||||| |||| |||| |||||||||||| ||||| || ||| Sbjct 3383 GGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTCTAGCTT 3324 Query 167666 TTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGAT 167725 |||| || || | ||||| ||||| ||||||||||| ||| ||||| | Sbjct 3323 TTAA-ATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAACCGTT 3265 Query 167726 TCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAA-CGCTGGCTTCATTTCTTTATG 167784 | |||| || |||||| | |||||||| ||| ||| || ||| | |||| |||||| Sbjct 3264 TTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATG 3205 Query 167785 TTATTCGTTCC 167795 || || || || Sbjct 3204 TTGTTTGTACC 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559771609073600