Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq203261 98.7 1e-15 seq161624 93.3 5e-14 >seq203261 Length=8816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 9/140 (6%) Strand=Plus/Plus Query 67735 TAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAA 67794 || |||| |||||||||||| |||| || || ||||| |||||||| | || | | Sbjct 1225 TATCAAG-GAACCGTGCATAACACTGAATAGGGAACCGTCGAATACAACAATTATGTCTA 1283 Query 67795 GCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAA 67854 ||||||||||| ||||||||||||||||||| |||||| | |||| |||| | Sbjct 1284 ACATATGGAATGAGTGCATAAGGATGTTGTGC--------GAACACAATCATGAAGTTGA 1335 Query 67855 AAGTACCAGAAATACCAAGA 67874 | |||||||| || || ||| Sbjct 1336 AGGTACCAGATATTCCTAGA 1355 >seq161624 Length=13970 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859 ||||||||||||||||||||| ||| ||| || ||||| || | ||| |||| |||||| Sbjct 9945 TGGAATGGGTGCATAAGGATGATGTACTCAGCCTGGAATACAATTATGAAGTTGAAAGTA 9886 Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919 || ||| || |||||||| | ||| || |||||||| | | || |||| Sbjct 9885 TCAAAAAGTCCTAGAGGCATACAATTAGAAAAGTTTTATTGACCGATTAGGTTGATCAAG 9826 Query 67920 AACACAGCGAATGCTGCAGAC-ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCAT 67978 || ||| | | | | || || ||| || ||||| ||| |||||||| ||||| Sbjct 9825 AAAACAAC-AGTAGTAACTACAACAAGAGTTGAATATGCAACAACAATCCAAGGGCGCAT 9767 Query 67979 ACCAAGACGGTAAGAAAGTTCCCACTGACGACCA-CAGTATG 68019 | | |||| | ||||||||||| | ||||| || |||| Sbjct 9766 ATCCAGACAAAATCTAAGTTCCCACTCATGACCATCATTATG 9725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565455817043040