Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6114 111 2e-19 seq161624 95.1 1e-14 seq208434 89.7 6e-13 seq203261 86.0 7e-12 seq203825 82.4 9e-11 >seq6114 Length=3795 Score = 111 bits (122), Expect = 2e-19 Identities = 179/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 66675 CCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCT 66734 ||||| || || |||||||| || ||||||| ||||| || | || |||| || || Sbjct 1696 CCTTCTTTTAAGAGAATGTTTTTGATGTAGAAAGTCTCAAATTTAGGATCTTTTGATGTA 1755 Query 66735 CTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCG 66794 | || |||||| | ||||||||||| ||| | | ||| |||| || | | | | Sbjct 1756 CAAATTTCTTGGAAAACAAAGTCATAGGCATGTAAGTTTAGAGATGGATCGACTACCCTA 1815 Query 66795 ATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACC-ACCT 66853 || ||| |||| | | | | || || |||||||||||||| |||| |||| || Sbjct 1816 GGGGCACTCATCCATAAATCGGTTACTGGTACAAACAACATAAAAAAATATAACCAACGA 1875 Query 66854 CTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTT--TGCAGTAACCATT 66911 |||||| ||| |||| |||||||| || |||| || | || || | ||||||| Sbjct 1876 TTTATTGGAAAAAGCAACCCCAAAGATTTGGAACCAAAAATGATTAATGAA--AACCATT 1933 Query 66912 GAGTAAGTTTCTTC 66925 || ||||||||||| Sbjct 1934 GAATAAGTTTCTTC 1947 >seq161624 Length=13970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68281 TGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTA 68340 ||||| |||||||| |||||| ||| ||| || ||||| || | ||| ||||||||||| Sbjct 9945 TGGAATGGGTGCATAAGGATGATGTACTCAGCCTGGAATACAATTATGAAGTTGAAAGTA 9886 Query 68341 CCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGG 68400 || ||| || |||||||| | ||| || |||||||| | | || || | Sbjct 9885 TCAAAAAGTCCTAGAGGCATACAATTAGAAAAGTTTTATTGACCGATTAGGTTGATCAAG 9826 Query 68401 AAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATA 68460 || || | | | || ||||| | | || ||||||||| |||||||| |||||| Sbjct 9825 AAAACAACAGTAGTAACTACAACAAGAGTTGAATATGCAACAACAATCCAAGGGCGCATA 9766 Query 68461 CCAAGACGATAGGAAAGTTCCCATTCA 68487 | |||| | | ||||||||| ||| Sbjct 9765 TCCAGACAAAATCTAAGTTCCCACTCA 9739 >seq208434 Length=3260 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 110 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 51 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 50 AGCTACTGAGGA 39 >seq203261 Length=8816 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/143 (73%), Gaps = 8/143 (6%) Strand=Plus/Plus Query 68213 AAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGC 68272 |||| | || |||||| ||||| ||||||| || || || | ||||| || | | Sbjct 1221 AAGTTATCAAGGAACCGTGCATAACACTGAATAGGGAACCGTCGAATACAACAATTATGT 1280 Query 68273 CGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGT 68332 | | ||||||||| | |||||| |||||||||||| |||||| | |||| ||| Sbjct 1281 CTAACATATGGAATGAGTGCATAAGGATGTTGTGC--------GAACACAATCATGAAGT 1332 Query 68333 TGAAAGTACCAGAAATGCCGAGA 68355 |||| |||||||| || || ||| Sbjct 1333 TGAAGGTACCAGATATTCCTAGA 1355 >seq203825 Length=6240 Score = 82.4 bits (90), Expect = 9e-11 Identities = 196/292 (67%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||||| || || | |||||| ||| | || | ||||| | Sbjct 1875 ACAAATAACATAAAGAAATGTAATCAACACTTATTAGAAAAAGTAACCTCGAAGATTAGG 1934 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 || | || ||| | | | |||||||| ||| ||||| ||| ||| | | || Sbjct 1935 GATAAAAAACGGATAGTGATGACCATTGAATAAACTTCTTTACCTTAAGTTGGATTAAAA 1994 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 ||| ||| ||| | | ||| |||||| | | | ||||| | | ||| ||||| Sbjct 1995 ACTT--AAAATGTCTATGTCATCATCATCTTAAAATAAGGTATT-TTTGTGGTATCACCA 2051 Query 67005 TGA--ATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACG 67062 ||| || || | |||| | | |||| | | | | | || ||||| |||| ||| | Sbjct 2052 TGAATATTGCCG--GGCAAAGTAACACCTAATACATCGACAACTCCCATAATATAAAATG 2109 Query 67063 GGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGAT 67114 |||||| ||||| ||||| ||||||| | ||||| | ||||| ||| || Sbjct 2110 AGTTCAATGTCCAATTATGAAATCCTTAGAAAAAGAGGATGAATCAAAATAT 2161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570549582298080