Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq127437 152 9e-32 seq44755 152 9e-32 seq207794 122 2e-22 seq73220 113 8e-20 >seq127437 Length=6100 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || ||||| || | ||| | |||||| ||| ||| Sbjct 2461 ATTTGCATTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTA 2520 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || || ||| || | || ||||| |||||||| || || || ||| Sbjct 2521 TAATCGGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGA 2580 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| | |||| ||| ||| ||||| || Sbjct 2581 TCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAG 2640 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || || || || || || || || || ||||||||||||||| Sbjct 2641 CTCTCAACTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 2697 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| ||||| ||||| || | ||| | |||||| ||| ||| Sbjct 2689 ATTTGCATTCCACCTCTCAAACGAAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTA 2748 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || || ||| || | || ||||| |||||||| || || || || Sbjct 2749 TAATCGGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 2808 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || ||||| ||||| | || | ||| ||| ||||| ||| Sbjct 2809 TCAGGGGGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAA 2868 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || |||||||| || || || || || || ||||| || ||||| Sbjct 2869 CTTTCCACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTCTTAACAAAGATCTGCAT 2924 >seq44755 Length=3421 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||| ||||| ||||| |||| ||| | ||| || ||| ||| Sbjct 2504 ATTTGCATTCCACCCCTCAAGCGAAGGACCAGGTGCAGTGTGGACTCCTTCTGAATGTTA 2563 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | |||||||| ||| || | || ||||| |||||||| || || || || Sbjct 2564 TAATCTGCCAACGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 2623 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| | |||| ||| || |||||||| Sbjct 2624 TCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAACTGTATCGGAG 2683 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || || || || || || || || || ||||||||||||||| Sbjct 2684 CTCTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATTTGCATT 2740 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| ||||| || || || | ||| | |||||| ||| ||| Sbjct 2732 ATTTGCATTCCACCTCTCAAACGAAGGACGAGGTGGAGTGTGGACTCTTTCTGAATGTTA 2791 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | || ||||| |||||||| || || || || Sbjct 2792 TAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 2851 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| || ||||| ||||| | || | ||| ||| ||||| ||| Sbjct 2852 TCAGGGGGGATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAA 2911 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || |||||||| || || || || ||||| ||||| || ||||| Sbjct 2912 CTTTCCACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 2967 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| ||||| || || || | ||| | ||| || ||| ||| Sbjct 2276 ATTTGCATTCCACCTCTCAGGCGAAGAACAAGGTGGAGTGTGGACTCCTTCTGAATGTTA 2335 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | || |||||||||||||| || || || || Sbjct 2336 TAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGG 2395 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| ||||| | |||| ||| || ||||| || Sbjct 2396 TCTGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCGATTGTATCAGAG 2455 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || || || |||||||||||||||||| Sbjct 2456 CTTTCCACCTCAAGTGTGATGGTCTTTCCAGTCAGTGTCTTTACAAATATTTGCATT 2512 >seq207794 Length=1432 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| ||||| || || || | ||| | ||| || ||| ||| Sbjct 1108 ATTTGCATTCCACCTCTCAGGCGAAGAACAAGGTGGAGTGTGGACTCCTTCTGAATGTTA 1167 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | || ||||| |||||||| || || || || Sbjct 1168 TAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 1227 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| ||||| | |||| ||| || ||||| || Sbjct 1228 TCTGGGGGGATTCCTTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATTGTATCAGAG 1287 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || ||||| || |||||||||||||||||| Sbjct 1288 CTTTCCACCTCAAGCGTGATGGTCTTTCCAGTTAGTGTCTTTACAAATATTTGCATT 1344 >seq73220 Length=12354 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| | || |||| | ||| |||| || || || ||||| |||| ||| Sbjct 6962 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 7021 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || ||||| || || || | ||| | ||| | ||| ||||| Sbjct 7022 TGCTGGTCCGGTGGAATACCTTCCTTGTCCTGGAGTTTTGCTTTCACATTGTCGATAGTG 7081 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||||||||| || || ||||||||||| || || || || |||||||||||| Sbjct 7082 TCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 7141 Query 193359 AT 193360 || Sbjct 7142 AT 7143 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || |||| || | |||| ||| || || || Sbjct 7136 ATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTG 7195 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | | ||| || | ||||| || ||||| || | ||||| || Sbjct 7196 TAGTCCGCCAATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGG 7255 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || ||||| | ||| | ||| || || || ||| Sbjct 7256 TCTGGGGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAA 7315 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 7316 CTCTCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| || | || | ||| || || ||| Sbjct 7592 ATTTGCATGCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTA 7651 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || | ||| || | || || || ||||| || | ||||| || Sbjct 7652 TAATCAGCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGG 7711 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || || | || | ||| ||| ||||| ||| Sbjct 7712 TCTGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTATCTGAA 7771 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || || || || || ||||||||||| ||||||||||||||| Sbjct 7772 CTCTCAACTTCAAGTGTGATGGTCTTTCCAGTTAGCGTTTTGACAAATATTTGCATT 7828 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | |||||| || ||||| | ||||| || || |||||| || || | Sbjct 6460 ACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATTCCTTCTGAATATTGTAATCTGC 6519 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| |||| || ||||| ||||| || | ||||| ||||| ||||| Sbjct 6520 CAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAATATGAGCCTCTGCTGATCTGGAGG 6579 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || ||||| || || | || | ||| || || || || ||| || Sbjct 6580 GATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCTATGGTGTCAGAGCTCTCCAC 6639 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||||||||| || || || ||||| || ||||| Sbjct 6640 CTCAAGTGTGATCGTTTTACCTGTCAGGGTCTTCACAAAAATCTGCAT 6687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897287814118080