Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq44755 127 3e-24 seq127437 116 5e-21 seq207794 114 2e-20 seq73220 105 1e-17 seq45179 105 1e-17 seq83787 91.5 2e-13 >seq44755 Length=3421 Score = 127 bits (140), Expect = 3e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| |||||||||| || || ||| | || || ||| || Sbjct 2512 AATGCAAATATTTGTAAAGACACTGACTGGAAAGACCATCACACTTGAGGTGGAAAGCTC 2453 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || || ||||| ||||| || ||||| || || ||||| || Sbjct 2452 TGATACAATCGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 2393 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| |||||| |||||||| || ||| ||| ||||| |||||||||| Sbjct 2392 GCAAAGGTTGATTTTTGCCGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 2333 Query 156002 TAT 156004 || Sbjct 2332 CAT 2330 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| ||| | || ||||| || || || | ||||| || || Sbjct 2740 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2681 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || || ||||| ||||| || ||||| || || || || || Sbjct 2680 CGATACAGTTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACCA 2621 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| |||||| || |||||||||| Sbjct 2620 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACGTTGGCAGATTATAA 2561 Query 156002 TAT 156004 || Sbjct 2560 CAT 2558 >seq127437 Length=6100 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| ||| | |||||||| || || || | ||||| || || Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2638 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || ||||| ||||| || ||||| || || || || || Sbjct 2637 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 2578 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| ||| ||||| | |||||||| Sbjct 2577 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 2518 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 2517 CATTCAGAAAGAGTCCACACTCCA 2494 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| ||| | ||||||||||| || || | ||||| || ||| Sbjct 2469 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 2410 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || ||||| ||||| || || || || || ||||| || Sbjct 2409 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 2350 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||| ||||| || ||| | || || ||||||| || Sbjct 2349 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 2290 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 2289 CATTCAGAAAGAGTCCACCCTTCATTTGGT 2260 >seq207794 Length=1432 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| | |||||||| || || || | || || ||| || Sbjct 1344 AATGCAAATATTTGTAAAGACACTAACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 1285 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || || ||||| ||||| || ||||| || || ||||| || Sbjct 1284 TGATACAATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 1225 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| ||| ||||| |||||||||| Sbjct 1224 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 1165 Query 156002 TAT 156004 || Sbjct 1164 CAT 1162 >seq73220 Length=12354 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||| || || | ||||| || |||| Sbjct 8055 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 7996 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||| || || || || || || || || Sbjct 7995 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 7936 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || ||||||||||| ||| || ||||| | |||||||| Sbjct 7935 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 7876 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 7875 ATTCAAAAAGAGTCCACCCTACA 7853 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||||||||| || | ||||| || || Sbjct 7599 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 7540 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| || || || || || || || ||||| || Sbjct 7539 GACACCATTGATAATGTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 7480 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | | || || | |||||||| Sbjct 7479 CAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAAC 7420 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| || || | | ||||||||||| Sbjct 7419 ATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGG 7373 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | ||||| | |||||||| || || ||| | ||||| || ||| Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || || || || || || || || |||||||| || Sbjct 7768 AGATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 7709 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||||||||| || ||| | | || || | |||||||| Sbjct 7708 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 7649 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 7648 CATCCAGAAGGAGTCCACCCTTCACTTGGT 7619 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| |||||||| || | ||||| || ||| Sbjct 7143 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCA 7084 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||| | || || || ||||| || || || || || Sbjct 7083 GACACTATCGACAATGTGAAAGCAAAACTCCAGGACAAGGAAGGTATTCCACCGGACCAG 7024 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| ||||||| | || || ||| Sbjct 7023 CAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAAT 6964 Query 156003 ATA 156005 ||| Sbjct 6963 ATA 6961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||||||||||||||| | ||||| || ||| Sbjct 7371 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 7312 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || || || || || || || ||||| || Sbjct 7311 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 7252 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||| ||||| |||||| Sbjct 7251 CAGAGGCTCATATTTGCGGGTAAACAGCTGGAAGAT 7216 >seq45179 Length=1454 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| |||| ||||| || ||||| |||| |||||| || Sbjct 557 AATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 498 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||||||| ||| || || ||||| || ||||| || || || || Sbjct 497 CGACACCATCGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACCA 438 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| || ||||||||||| ||||| | ||||| | | ||||| || Sbjct 437 GCAGAGGCTGATTTTCGCAGGTAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACAA 378 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || || || ||| Sbjct 377 CATTCAGAAAGAGTCAACCCTCCACTTGGTG 347 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || ||||| || ||||| || ||||||||| || Sbjct 1012 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 953 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || || || || || || || || || Sbjct 952 GACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 893 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||||||||||||||||||| |||| | | ||||| ||| Sbjct 892 CAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 833 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 832 ATCCAGAAAGAGTCAACTCTTCACTTGGT 804 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || ||||| || || || | || |||||| || Sbjct 784 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAAAGCTCC 725 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||| || || || || || ||||| || || || || Sbjct 724 GACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAG 665 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||||||||||| |||||| | |||| | | || || ||| Sbjct 664 CAGAGGCTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGAACCCTCGCTGACTACAAT 605 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||| || || || ||| Sbjct 604 ATCCAGAAAGAGTCGACTCTGCACTTGGTG 575 >seq83787 Length=2295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || ||||| || ||||| || ||||||||| || Sbjct 1908 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 1967 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || || || || || || || || || || Sbjct 1968 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 2027 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| ||||||||||||||| |||| | | ||||| ||| Sbjct 2028 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 2087 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 2088 ATCCAGAAAGAGTCAACTCTTCA 2110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729946774110400