Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq127437 114 3e-20 seq73220 114 3e-20 seq207794 100 6e-16 seq44755 98.7 2e-15 seq45179 91.5 3e-13 seq84576 89.7 1e-12 seq83787 86.0 1e-11 >seq127437 Length=6100 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || ||||| | || | |||||| || || ||||| Sbjct 2239 ATTCCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCT 2298 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||||||||||||||||| | ||||| || || || Sbjct 2299 GCCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGG 2358 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| ||||| |||||||| || | || || ||| Sbjct 2359 GGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCT 2418 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || |||||||| ||||| | ||| |||| ||| || |||||| Sbjct 2419 ACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 2469 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||| | ||| || || || ||||||| Sbjct 1786 CCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 1845 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| ||||| || || || |||||||| | ||||| ||||| || || Sbjct 1846 AGTGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGG 1905 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || ||||| || |||||| ||| | ||||| || || Sbjct 1906 ATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACC 1965 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || || | || || | |||||||||||| Sbjct 1966 TCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 2012 >seq73220 Length=12354 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | ||| || ||| ||||||||| Sbjct 7598 ATGCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCA 7657 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| |||| || |||||||||||||| | ||||| || || || Sbjct 7658 GCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGA 7717 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | |||||| || Sbjct 7718 GGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTATCTGAACTCTCA 7777 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || ||||| || ||||||| ||||| | |||||| |||||| Sbjct 7778 ACTTCAAGTGTGATGGTCTTTCCAGTTAGCGTTTTGACAAATATTTGCATT 7828 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| || ||||| |||| || | || |||||||||||||||| ||| Sbjct 6962 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 7021 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || || || | ||| ||| ||||| |||| Sbjct 7022 TGCTGGTCCGGTGGAATACCTTCCTTGTCCTGGAGTTTTGCTTTCACATTGTCGATAGTG 7081 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || ||||| || || || ||||||||||| | || || | |||||| ||| Sbjct 7082 TCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 7141 Query 192535 AT 192536 || Sbjct 7142 AT 7143 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || | || | |||| ||||| || || || || Sbjct 6686 ATACCTCCACGAAGGCGAAGAACAAGGTGAAGCGTAGATTCTTTCTGTATGTTGTAGTCG 6745 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||||| ||||||||||| | |||||||| ||||| Sbjct 6746 GCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGA 6805 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| || ||||| || | ||||| || Sbjct 6806 GGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 6865 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || |||||||||||||| || || | ||| |||||||| Sbjct 6866 ACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 6915 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| | || || || | || | |||||| ||| ||||||||| Sbjct 7370 ATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCA 7429 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || ||||||||||| || | ||||| || || || Sbjct 7430 GCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGG 7489 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| |||||| || | ||||| || Sbjct 7490 GGAATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCA 7549 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| ||||| | || || | ||| || ||||| Sbjct 7550 ACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7599 >seq207794 Length=1432 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||||| ||| || || || ||||||| Sbjct 661 CCCCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCA 720 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| ||||| || || || |||||||| | ||||| ||||| || || Sbjct 721 AGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGG 780 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| || |||||| ||| | ||||| || || Sbjct 781 ATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACC 840 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || || || || | || || | ||||||||||||| Sbjct 841 TCTAGTGTAATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCATT 888 >seq44755 Length=3421 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||||| ||| || || || ||||||| Sbjct 1829 CCCCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCA 1888 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| ||||| || || || |||||||| | ||||| ||||| || || Sbjct 1889 AGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGG 1948 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| || |||||| ||| | ||||| || || Sbjct 1949 ATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACC 2008 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || || | || || | |||||||||||| Sbjct 2009 TCTAGTGTAATCGTCTTTCCTGTCAGGGTCTTCACAAATATCTGCAT 2055 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || ||||||| | || | | |||| || | |||||||||||||||| Sbjct 2095 CTTTTGA-ATGTTGTAATCAGCCAGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGA 2153 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||||| ||||| || || || || || || ||||| || || || ||||| Sbjct 2154 TGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGT 2213 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || || ||||| ||||| ||||| || ||||| | ||| || | || Sbjct 2214 CGATTGTGTCAGAGCTCTCCACTTCAAGAGTGATGGTCTTTCCAGTCAGTGTCTTCACAA 2273 Query 192527 ATATCTGCATT 192537 |||| |||||| Sbjct 2274 ATATTTGCATT 2284 >seq45179 Length=1454 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | ||| | |||||| |||||| ||||| | | ||||| Sbjct 795 AGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGC 854 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | || ||||| |||||||| | ||||| || || ||||| || || || Sbjct 855 CCATCTTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCC 914 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || || ||| ||||| || | || || ||| ||||| | |||| Sbjct 915 TTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCGACTTCCAAAGTA 974 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || | || || | |||||||||||| Sbjct 975 ATGGTCTTTCCTGTAAGAGTCTTCACAAATATCTGCAT 1012 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | || | |||||| || || ||||| Sbjct 327 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCC 386 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || |||| || ||||| || || || | ||||| || || ||| Sbjct 387 GCGAGAGTTCGGCCGTCTTCCAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGT 446 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || ||| ||| || || || | || || ||| Sbjct 447 GGAATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCG 506 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||||||||| || || || || | ||||||| ||| ||||||||| Sbjct 507 ACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCATT 557 >seq84576 Length=1122 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||| | ||| || || || ||||||| Sbjct 785 CCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 844 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| ||||| || || || |||||||| | ||||| ||||| || || Sbjct 845 AGTGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGG 904 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || ||||| || |||||| ||| | ||||| || || Sbjct 905 ATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACC 964 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || || | || || | |||||||||||| Sbjct 965 TCTAGTGTGATCGTCTTTCCTGTCAGGGTCTTCACAAATATCTGCAT 1011 >seq83787 Length=2295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | || | || | ||| | |||||| |||||| ||||| Sbjct 2137 ATCCCTCCACGAAGACGGAGGACCAGGTGAAGAGTTGACTCTTTCTGGATATTGTAATCG 2078 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || || || |||||||| | ||||| || || ||| Sbjct 2077 GCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGT 2018 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || ||| || || || | || || ||| Sbjct 2017 GGAATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCG 1958 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||| || || || | ||||| | |||||||||||| Sbjct 1957 ACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTTTTCACAAATATCTGCAT 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825533039400