Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq127437 114 2e-20 seq207794 105 1e-17 seq45179 102 1e-16 seq73220 100 5e-16 seq44755 100 5e-16 seq189491 87.8 3e-12 >seq127437 Length=6100 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || ||||| | || | |||||| ||| || |||||| Sbjct 2239 ATTCCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCT 2298 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | |||||||||||||| || | ||||| ||||| || Sbjct 2299 GCCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGG 2358 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| ||||| |||||||| || || || || ||| Sbjct 2359 GGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCT 2418 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || |||||||| ||||| | ||| |||| || || |||||| Sbjct 2419 ACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 2469 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || | || | || | |||||| ||| |||||||| Sbjct 2467 ATTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCG 2526 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || ||||||||||| || || || || ||||| Sbjct 2527 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGG 2586 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| |||||||| || ||||| || || Sbjct 2587 GGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCA 2646 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || ||||| | ||| |||| ||||| |||||| Sbjct 2647 ACTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 2697 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || | || | || | |||||| ||| |||||||| Sbjct 2695 ATTCCACCTCTCAAACGAAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCG 2754 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || ||||||||||| || || || |||||||| Sbjct 2755 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGG 2814 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 2815 GGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAACTTTCC 2874 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | || |||| || |||||||| Sbjct 2875 ACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTCTTAACAAAGATCTGCAT 2924 >seq207794 Length=1432 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | || | ||| || ||| ||||||||| Sbjct 1114 ATTCCACCTCTCAGGCGAAGAACAAGGTGGAGTGTGGACTCCTTCTGAATGTTATAATCT 1173 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || ||||||||||| || || || ||||| || Sbjct 1174 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGG 1233 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| |||||||| || ||||| || ||| Sbjct 1234 GGGATTCCTTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATTGTATCAGAGCTTTCC 1293 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || ||||||| ||| || | ||||| |||||| Sbjct 1294 ACCTCAAGCGTGATGGTCTTTCCAGTTAGTGTCTTTACAAATATTTGCATT 1344 >seq45179 Length=1454 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | || | |||||| ||| || ||||| Sbjct 327 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCC 386 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| |||| || ||||| || ||||| | ||||| ||||| ||| Sbjct 387 GCGAGAGTTCGGCCGTCTTCCAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGT 446 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| ||| || || || || || || ||| Sbjct 447 GGAATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCG 506 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||||||| || || || || | ||||||| || ||||||||| Sbjct 507 ACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCATT 557 >seq73220 Length=12354 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||| | |||| || | |||||| ||| |||||||| Sbjct 7826 ATTCCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCG 7885 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || ||||||||||| || || || |||||||| Sbjct 7886 GCCAAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGG 7945 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| || ||||| || ||||| || || Sbjct 7946 GGGATACCCTCCTTGTCTTGGATTTTTGCCTTAACATTGTCAATGGTATCAGAACTCTCA 8005 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| |||||||| ||||| | || |||| || |||||||| Sbjct 8006 ACTTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 8055 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | |||||||||||||| || || ||||| || || || ||| Sbjct 6770 TGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATT 6829 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || ||||| || ||||| ||||| || ||||||||| Sbjct 6830 TTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCA 6889 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || | || |||||||| Sbjct 6890 GTTAAGGTCTTCACAAAAATCTGCAT 6915 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || | |||| ||| | || || | || ||||||||||| |||| ||| Sbjct 6962 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 7021 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| || || || | ||| ||| ||||| ||||| Sbjct 7022 TGCTGGTCCGGTGGAATACCTTCCTTGTCCTGGAGTTTTGCTTTCACATTGTCGATAGTG 7081 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || ||||| || || || ||||||||||| | || || | ||||| ||| Sbjct 7082 TCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 7141 Query 172068 AT 172069 || Sbjct 7142 AT 7143 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || || || | || | ||| || || |||||||| Sbjct 7598 ATGCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCA 7657 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || |||| || ||||||||||| || | ||||| ||||| || Sbjct 7658 GCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGA 7717 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || ||||| || |||||||| || Sbjct 7718 GGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTATCTGAACTCTCA 7777 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || ||||||| ||||| | ||||| |||||| Sbjct 7778 ACTTCAAGTGTGATGGTCTTTCCAGTTAGCGTTTTGACAAATATTTGCATT 7828 >seq44755 Length=3421 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || | || | || | |||||| ||| ||||||||| Sbjct 2738 ATTCCACCTCTCAAACGAAGGACGAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCT 2797 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || ||||||||||| || || || |||||||| Sbjct 2798 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGG 2857 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || ||||| || ||||| || ||| Sbjct 2858 GGGATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAACTTTCC 2917 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | ||||||| || |||||||| Sbjct 2918 ACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 2967 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||||| || | || | || || | || || ||||||||||| || || Sbjct 2557 AATGTTATAATCTGCCAACGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCT 2616 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || |||||||| || |||||||| || ||||| ||||| |||||||| | || Sbjct 2617 TTGCTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAACTGT 2676 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || ||||| || || ||||| || || || | ||| |||| ||||| || Sbjct 2677 ATCGGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATTTG 2736 Query 172067 CATT 172070 |||| Sbjct 2737 CATT 2740 >seq189491 Length=616 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| || || || |||||||| || || ||||| || ||||| ||| Sbjct 14 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATACCTTCCTTGTCTTGGATT 73 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || ||||| || ||| ||||| || || || || || ||| Sbjct 74 TTCGCCTTAACATTGTCAATGGTATCAGAACTTTCCACTTCAAGGGTTATAGTCTTCCCA 133 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||||| || |||||||| Sbjct 134 GTAAGGGTTTTAACAAAGATCTGCAT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902754994495200