Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq90559 138 3e-27 seq208648 111 5e-19 seq74520 107 6e-18 seq10330 107 6e-18 seq135254 95.1 4e-14 seq135094 89.7 2e-12 seq136283 84.2 6e-11 >seq90559 Length=17024 Score = 138 bits (152), Expect = 3e-27 Identities = 286/418 (68%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||||||||| ||| || | ||||||| ||||| || || |||||||| |||| Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | ||| | | ||| | | || || ||||||||||| |||||||| | Sbjct 6022 CC---AAGACCTGCCCCTCTC---TGCCTCCCCACTGCATCAATTTCATCAATGAACACA 5969 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | ||| | | || | |||| || || | || | ||||||||| | Sbjct 5968 ATGCAGGGTGCCTTTGATTTTGCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACT 5909 Query 289120 CCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGCTTC 289178 || ||| ||| ||| || |||||||| || | || ||| ||||| ||| |||||| Sbjct 5908 CCTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAA-GAATGGCACACCTGCTTC 5850 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || ||||| || ||||| || ||||| || ||||| |||||||| | || ||| Sbjct 5849 TCCGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGTGGTCCAACCAAAAGACA 5790 Query 289239 TCCCTTTGGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAAATTCT 289296 ||||| || | ||| || ||||| | || | || || |||||| | || || || || Sbjct 5789 ACCCTTGGGAATTTTGGCTCCCAG--GGCTGTGTACTTATCAGGGTTTTTCAAGAAATCG 5732 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||| |||| || || |||||||| ||| ||| || ||||| || || |||| Sbjct 5731 ACAACCTCCTGCAGCTCCAGTTTTGCCTGATCGGCTCCGGCGACATCTGCGAATGTAA 5674 >seq208648 Length=6544 Score = 111 bits (122), Expect = 5e-19 Identities = 263/385 (68%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || ||| | |||||||| |||||| ||| | || || ||| || Sbjct 1559 TGATTAAGAGTACTTTCACGCTCATCATTGGAACCTGA-GAAGCCTCCACGTC-CTC-TT 1615 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||| || ||||| || || | || || | | || || || Sbjct 1616 GCTCGACCAATTGCATCAATCTCATCAATAAATATTATACTAGGTGCACACTGCCTTGC- 1674 Query 289084 ATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 || | ||| || | ||| || | ||||| ||||| ||||||| |||| || | ||| | Sbjct 1675 -TTCCTGAAACAAGTTTCTCACCCTGGATGGTCCAACACCAACAAACATCTCCATAAAAT 1733 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 | ||| | |||| | || | ||| | || | ||| ||||| ||| | || ||| Sbjct 1734 CTGAACCAGATA-TGGATAAGAAAGGCACGGCAGATTCTCCTGCAGTTGCTTTTGCTAGA 1792 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCC 289259 || ||||| ||||| || || || ||| | || ||| | || ||||| | |||||| ||| Sbjct 1793 AGGGTCTTCCCTGTGCCTGGAGGGCCCACCAAAAGAGCACCTTTTGGAATTTTTGCTCCC 1852 Query 289260 AGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | ||| |||||| | ||| |||| | || | |||| |||| | ||| | | Sbjct 1853 AACT--CTTCATATTTTTTAGGATTCTTGAGGAAGTGCACAAATTCCATGATTTCTTGCT 1910 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 |||| ||||||||||| || ||||| Sbjct 1911 TTGCTTCATCACATCCAGCAACATC 1935 >seq74520 Length=9548 Score = 107 bits (118), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| ||||| || ||||| | |||||| || | || Sbjct 3598 TACCCTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTA 3657 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| |||||||| || ||||| ||||| ||||||| || | | | Sbjct 3658 GCATAGGAACAATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCAC 3717 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | | ||||| || || | | || || ||| || |||| Sbjct 3718 GAATGTTATGAACAGAAACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCT 3777 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||| | | || ||||||||| |||||||| ||| Sbjct 3778 TTAGAGTGTCATATATTCCTTCAATACTATCATCTTTCAT 3817 >seq10330 Length=24535 Score = 107 bits (118), Expect = 6e-18 Identities = 229/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || || ||| |||||| | ||| || || |||||| ||| | | || | | Sbjct 11326 TTCCTAACAGTCCCATCATATTTGACCATGATATCCTCCATAGCCTTCACCAGTCGTCTC 11267 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| |||||| || || || || || ||||| || || || | | ||||||| Sbjct 11266 TGGATATACCCAGTTTCGGAAGTCTTCACCGCAGTATCTATAAGGCCTTCTCTACCACCC 11207 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || |||||||| || | ||| | || || || | | | | || | || || || Sbjct 11206 ATGGCATGGAAAAAGAACTCCTGTGGGGTCAGTCCTCGCAGATAAGAATTTTCCACAAAC 11147 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT-- 302776 ||||| || || || ||| ||||| || ||||||| |||| | | || Sbjct 11146 CCACGACTTTCTGGGCCATAGTCATCTTTGGTGAAATGTGGCAATGTCCGG--CCAATGA 11089 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| ||||| || |||||||||||||| |||| || | | ||||||| | Sbjct 11088 ATCCATATGGGATTCGCTTACCCTCAACGTTCTGCTGCCCCACACAAGTAGTCATCTGTG 11029 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| | ||| || |||||||| || | ||||| Sbjct 11028 ATATATTGATGAAACTTCCTTTGGAGCCTGCTGTAACCAT 10989 >seq135254 Length=6094 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || ||||||||| | |||| | | || | ||| |||| | | Sbjct 254 ACAGACATGAACCCTATAAGCATCACTTTGGTCAAACAACCTTTCTTTGAGGAAGTGGGC 313 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| || || | |||||| || ||||| |||||||| || ||||| ||||||||||| || Sbjct 314 TGCTCCATGAGCAATCATGCAGTCACGTTCCATTTCTCCAAAACGGAGACCACCATCACG 373 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | ||||| |||||||| | ||| || Sbjct 374 AGATCGCCCCTCAGCAGGCTGTCTAGTAAG 403 >seq135094 Length=3803 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 |||||| | ||||| ||||| || || ||||| ||||| | | || | | ||| Sbjct 1534 CTCCTTGCTCAACCAATTGCATCTATCTCATCAATAAAAATTATGCTAGGTGCACAATGT 1593 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || | ||| || | | | || | ||||| ||||| ||| || ||||||| | | Sbjct 1594 CTTGCCTCTTGAAACAAATTTATGACCCTGGATGGTCCAACTCCAGCAAACATTTCCATA 1653 Query 289138 AATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 || || || | |||| | || | ||| |||| | || |||||| ||| | || Sbjct 1654 AAATCTGATCCAGATA-TAGATAGGAAAAGCACATCAGATTTGCCTGCAGTTGCTTTTGC 1712 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 ||||||||||| ||||| ||||| || || | | ||| | || ||||| | |||||| Sbjct 1713 AAGAAGTGTCTTCCCTGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTTGGAATTTTTGC 1772 Query 289257 -CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 |||| | || |||||||| || ||| | || | |||| ||| | ||| | Sbjct 1773 TCCCAAC-TCCTCATATTTCTTTGGCTTCTCGAGGAAGTGCACAAACTCCATGATTTCTT 1831 Query 289316 ATTTTGCCTCATCACATCCTGC 289337 |||||||||||||| || || Sbjct 1832 GCTTTGCCTCATCACAGCCAGC 1853 >seq136283 Length=4278 Score = 84.2 bits (92), Expect = 6e-11 Identities = 219/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATTG 289087 ||||||||||||||||| |||| || | | || |||| ||| | | || ||| Sbjct 794 CCAACAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTCTTG 735 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | || | || | ||||| |||| ||||||| |||| || ||||| |||||| Sbjct 734 AAAAGA--TCACGGACTCTAGATGCACCAACACCAACAAACATCTCAACAAACTCAGAAC 677 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | || | |||| ||| |||||| || || | |||| | || || || ||| Sbjct 676 CTGAGA-TAGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTAGCTAGCAGAGTC 618 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || ||||| || || || | | ||||| || || || | || ||| | | Sbjct 617 TTCCCAGTTCCTGGAGGGCCAACAAGAAGAACACCTTTAGGAATGCGAGCTCCAACTGCA 558 Query 289267 TTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | || |||| ||||| ||| | ||| || || | |||| | || | |||||| || Sbjct 557 GTGAATCTCTC-GGGCTTTTTCAGAAACTCCACTACTTCCATGAAATCTTGTTTTGCTTC 499 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 ||| || || |||||| |||| || Sbjct 498 ATCTACCCCAGCAACATCATCAAATGT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467849117967628