Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq43099 123 3e-23 seq129087 111 2e-19 seq161624 95.1 1e-14 >seq43099 Length=3685 Score = 123 bits (136), Expect = 3e-23 Identities = 247/366 (67%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 159920 TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGAC 159979 ||||||||| || |||||||| ||| ||| ||| || ||||| || |||| || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 159980 TTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 160039 ||| || ||||| | || ||||| || | || | ||||| | ||| ||||| || Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 160040 CAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTC 160099 || | ||| | |||||||| |||| || || || | | | | |||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 160100 TATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGAT 160159 | |||| | |||| || ||||| || | |||| || | ||||| ||||| || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 160160 CAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGA 160219 | | || |||||||| |||||||||| |||||||||||||| || || || || || Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 160220 AGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGA 160279 ||| | | | | ||| ||||| | ||||| || |||||||| |||| ||| | || Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 160280 AGAAGT 160285 || || Sbjct 1942 GGAGGT 1937 >seq129087 Length=3483 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 159615 CTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATCCGTCCTTAC 159674 ||||| ||||||||| | ||||| || ||||| || || | || | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 159675 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCA 159734 ||||| || || ||||||| ||| |||| ||||||||| || ||||| || || ||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 159735 TTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 159794 || |||||||| ||||| | | | || ||||| || | | | || ||| ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 159795 CTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATG 159848 || | || ||||| |||| || |||| || || || || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq161624 Length=13970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 157918 TGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGC 157977 ||||||||||||| || || | | ||||||||| ||||| ||| |||||||| | Sbjct 9739 TGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATATTCAAC 9798 Query 157978 TCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 158037 || || | | | ||| ||| ||| | || | | |||||||| || || Sbjct 9799 TCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAACTTTTC 9858 Query 158038 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 158097 || ||||||||| || | | || |||||| |||| ||| |||||||||| || || Sbjct 9859 TAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAGGCTGA 9918 Query 158098 ACACAACATCCTTATGCACCCGTTCCA 158124 ||| ||||||||||||||| ||||| Sbjct 9919 GTACATCATCCTTATGCACCCATTCCA 9945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546931873722080